Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 05.1_202017-04-19] 946 sequences; 18,403,683 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq481 228 9e-55 seq658 113 5e-20 seq261 82.4 8e-11 >seq481 Length=111115 Score = 228 bits (252), Expect = 9e-55 Identities = 801/1237 (65%), Gaps = 34/1237 (3%) Strand=Plus/Minus Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAG 19276 ||||||||||||||||| | || || ||||| || ||||| ||||| |||||| Sbjct 15198 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 15139 Query 19277 GATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGG 19336 |||||| |||||| || |||||||| || |||||| || || || ||||||||| Sbjct 15138 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 15079 Query 19337 TCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGG 19395 |||| ||||| || | ||| | | | |||||||| ||| || | || || Sbjct 15078 GCCGGTGGTATTGGTCTTCACATTCAC-AATATCCGTGCGAAGGGCTCCTACATTGCCGG 15020 Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455 || || || || |||| ||| | || |||||||| | | | || ||| || | Sbjct 15019 TACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCG 14960 Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515 ||||| | || || || ||| || || | ||||||||||| || ||||| || Sbjct 14959 ATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTG 14900 Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575 |||||| || || | || ||| | || | | |||||| ||| | |||||| | || Sbjct 14899 GCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACG 14840 Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635 ||| || || ||| ||| | ||||| | || || |||||| || || || Sbjct 14839 AGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATC 14780 Query 19636 GGACGAAGAATGGCACCTGATGTG-CCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694 || | || ||| || ||||| ||||| ||| |||||||| || ||||||| |||| Sbjct 14779 CGATGGGGATTGGACTCTTATGTGTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACG 14721 Query 19695 GCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGG 19754 | || | || | || | || || |||| |||||| | | ||| Sbjct 14720 GTGAAGAATTTGAAAAGCTTTATGAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTA 14661 Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814 || |||| | | | ||| | | ||||| | || |||||| || || | Sbjct 14660 TCAAAGCCCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTT 14601 Query 19815 ACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCA 19874 |||| ||||||||||| || || ||| ||||||| || || ||| || | || | |||| Sbjct 14600 ACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCA 14541 Query 19875 AGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGT 19934 | || ||||| |||||||||||||||||| ||| || || || ||| || | Sbjct 14540 AATCCAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCT 14481 Query 19935 GTAATCTGGCGTCCCTGTGC-CTGCCGACTTTCGTCAAGGCCT----CCTC----CTTCG 19985 ||||||| || || || ||| || || | ||||| || ||| | || || | Sbjct 14480 GTAATCTTGCTTCTCT-TGCTCTTCCTGCCTTCGT--AGACCTGGAACGTCGCGTCTATG 14424 Query 19986 ACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCG 20045 |||| || || ||||| | ||| ||| || || || || | || ||| Sbjct 14423 ACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTAATCA 14364 Query 20046 ATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGA 20102 || |||| || || | | || ||| ||||| || || |||||||| ||||| Sbjct 14363 CCCGTAACTACTATCCAGTGCCTGA---GGCCCGCAACTCCAACATGCGCCATCGGCCTG 14307 Query 20103 TCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACG 20162 | | | || |||||||| || ||||||| ||||||| || || | | |||||| Sbjct 14306 TTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGTTCGACT 14247 Query 20163 ATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCC 20222 | |||| | || ||||| | ||||||||| | | ||||||||||| || Sbjct 14246 CCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGGCGCTTG 14187 Query 20223 TGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG 20282 || || |||||||| ||| | ||| || | || || | | | | || || ||| Sbjct 14186 AGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTTCTCCCA 14127 Query 20283 CGTCCGAGGGTATCCTCCAGCCGGACATGTGGGG-CGT-----CACTGAGAATGAGTTTT 20336 || |||||||||| ||| ||||||||||| ||| ||| || | | | Sbjct 14126 TCTCTAAGGGTATCCTTCAGTACGACATGTGGGGCCGTGTTCCCACCGACCTTTGGGACT 14067 Query 20337 GGAGCGCCCTCAAGGTTGAGATC---AAGACCCACGGGCTTCGCAACTCGTTGCTCGTCG 20393 ||| | || |||| ||||| ||| |||| | | ||||| |||||||||| Sbjct 14066 GGACAGAGCTGAAGGCCAAGATCGCACAGA---ACGGTGTGAGGAACTCTTTGCTCGTCG 14010 Query 20394 CGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGG 20430 | || ||||| || ||||| || | || ||| |||| Sbjct 14009 CCCCTATGCCTACTGCCTCAACGTCTCAAATCTTGGG 13973 Score = 206 bits (228), Expect = 3e-48 Identities = 792/1232 (64%), Gaps = 24/1232 (2%) Strand=Plus/Plus Query 78574 CCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGA 78633 |||| ||| || | || ||||| || ||||| || ||||| || | ||| |||| | | Sbjct 13973 CCCAAGATTTGAGACGTTGAGGCAGTAGGCATAGGGGCGACGAGCAAAGAGTTCCTCACA 14032 Query 78634 CCATGCGTCTTGATCTCGACCTTTAGGCC------GTCCCAAAATTCATTCGCCGCGATC 78687 || | | ||||| | |||| || | |||||||| || | | | Sbjct 14033 CCGTTCTGTGCGATCTTGGCCTTCAGCTCTGTCCAGTCCCAAAGGTCGGTGGGAACACGG 14092 Query 78688 CCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAA 78747 ||||||||||| ||||||||||||| || || || || | | | | || || Sbjct 14093 CCCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAG 14152 Query 78748 GATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCG 78807 | || ||||| ||| |||||||||||| | || ||||||||||| | | |||| Sbjct 14153 GTACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCG 14212 Query 78808 AAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATG 78867 ||||| | ||||| || | |||| | |||||||| | || || |||| Sbjct 14213 AAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATG 14272 Query 78868 AAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTT 78927 || | ||||| || |||||||| || | | | | || || |||||||||||| || Sbjct 14273 AAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGAGTTG 14332 Query 78928 CGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTG 78984 |||||| || | | || || |||| || ||| || || ||||| || Sbjct 14333 CGGGCC---TCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTA 14389 Query 78985 ACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAAT---GAT-TTCCT--TTGATG 79038 || ||| || | ||||| || || ||| ||| | || |||| | | | Sbjct 14390 ACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTCTACG 14449 Query 79039 AAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAAC 79097 || | || || ||| || || || || || || || || || || || |||| Sbjct 14450 AAGGCAGGAAGAGCA-AGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 14508 Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| |||||||| || || | ||| || |||||||| || | || ||| |||||| Sbjct 14509 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 14568 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTT 79217 ||| ||| || ||||||||||| ||||| || || ||||| ||| || Sbjct 14569 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTC 14628 Query 79218 GAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGAC 79277 ||| | | || ||| | | | |||| || | ||| | | ||||| | Sbjct 14629 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 14688 Query 79278 GTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTC 79337 ||| || || | || | || | || || || || |||| || || |||||||| Sbjct 14689 GTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTC 14748 Query 79338 GTGCGGG-CACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCG 79396 | ||||| ||||| || ||| ||| | || || || || |||||| || || | Sbjct 14749 G-GCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 14807 Query 79397 GGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGAC 79456 |||||| ||||| ||| || || || || | |||||| | || |||||| | Sbjct 14808 AGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 14867 Query 79457 GCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAAC 79516 | || | ||||| | | || |||||||| ||||| |||||||||||||| | || Sbjct 14868 TTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCAC 14927 Query 79517 CCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCA 79576 | |||||| || || || | ||||| || || ||| || | || ||||||||| Sbjct 14928 CAGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCA 14987 Query 79577 TGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAA 79636 | || | |||||||| || | || || || ||| || | || |||| || | Sbjct 14988 TAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGA 15047 Query 79637 TGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTG 79695 | || | | | ||| | || || || |||| ||||||||| || || || |||| Sbjct 15048 TATT-GTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTG 15106 Query 79696 AGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGAC 79755 || || |||||||| || || || ||||| |||||||| || || |||||||| ||| Sbjct 15107 AGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGAC 15166 Query 79756 ATCTGTGGGTTGTTCGTACCGGCGTTGAAGAG 79787 || || || | |||||||||||||| || Sbjct 15167 ATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 15198 >seq658 Length=79865 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || ||||| |||||||| |||||| || |||||||||||||| || ||| | || Sbjct 63808 CGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATC 63749 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 |||||||| || ||||| || |||||||| || || | ||||| |||||||| || || Sbjct 63748 TTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAGCTCATCTCT 63689 Query 60102 CGGGACGAGGGCCTCCA 60118 || |||||||| ||||| Sbjct 63688 CGAGACGAGGGTCTCCA 63672 >seq261 Length=51033 Score = 82.4 bits (90), Expect = 8e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 |||||||||||||||||||| || ||||| ||||| || || ||| || |||||| | Sbjct 13848 GCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTA 13907 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || | ||||| || |||| || || |||||| |||| |||| ||| Sbjct 13908 AAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCGAACGAGTTGATCAGTAGGGATGAG 13967 Query 60111 GGCCTCCAT-CAG-GAGTT 60127 || | ||| ||| ||||| Sbjct 13968 GGGATGCATACAGTGAGTT 13986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548518313694240