Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq774 158 2e-33 seq940 93.3 6e-14 seq239 84.2 3e-11 >seq774 Length=91181 Score = 158 bits (174), Expect = 2e-33 Identities = 233/329 (71%), Gaps = 6/329 (2%) Strand=Plus/Minus Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCCG 125315 |||||| | ||| | || | |||||| || || |||| |||||| || | | Sbjct 64664 GAGAACATCCACGCCGAGACCTACTCTCTCCTCATCGACACCTACATTAAGGACACTGCT 64605 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | ||| || | | |||||| |||| || ||||| | || | ||| || || ||||| Sbjct 64604 CGACGAAA---CTTCCTCTTTGACGCTATGGACACCATTCCTTGTATCCGAAAGAAGGCC 64548 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| |||| |||||| |||| | || |||| | || ||| |||| | || Sbjct 64547 GACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTTGTTTCGGCGAGCGACTCATTGCT 64488 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 || || ||||| ||||| |||||||| || ||| ||| ||| ||||||| ||||| ||| Sbjct 64487 TTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGCTTAAG 64428 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || |||||||| || || || | ||||||| | || |||||||||||||| Sbjct 64427 AAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAGCTCATCTCTCGAGACGAGGGT 64368 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTT 125584 || ||| ||||||||| ||| || || Sbjct 64367 CTCCACACCGACTTTGCCTGTCTCCTCTT 64339 >seq940 Length=44898 Score = 93.3 bits (102), Expect = 6e-14 Identities = 220/330 (67%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 69884 GACAACAACCTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAG 69943 ||||||| ||| ||||| |||||||||| ||||| | |||||||| | ||| Sbjct 36741 GACAACACCCTTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAG 36800 Query 69944 CTCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACAC 70003 || |||||| | |||| || | ||| | ||||| | ||| | |||| ||| Sbjct 36801 CTTTTGTGGTTCGTTTCTGGTTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGG 36860 Query 70004 ATTTGGAGCGGCAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACA 70062 || ||| || ||| | || | ||| || |||| | |||| || | ||||| Sbjct 36861 ATCTGGGATGGTAACGGAAG-CAAAGAATTCCTGGAGAAGGTCGGGCTCGGCCACAGAAG 36919 Query 70063 AGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGT 70122 || || |||||||| || |||||||| ||||||||||| || | || || |||| Sbjct 36920 GGAAGGTGATCTGGGACCTGTGTACGGGTTCCAGTGGAGACATTTTGGTGCCGAGTACAC 36979 Query 70123 AGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182 || ||| |||||| || | || || || ||| |||| | | || ||||| Sbjct 36980 TGATGCCGACGGCGACTATAAGGACAAAGGAGTCGACCAACTGCAAAGGGTAATCGACAC 37039 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGAT 70212 |||||| ||||||||| || ||| |||| Sbjct 37040 CATCAAGAACAATCCAACTGACAGGCGGAT 37069 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 70301 AAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAAC 70360 ||| | || ||| | ||||||||||| | ||| | ||||||||||| || || ||| Sbjct 37235 AAACTTTCTTGCCTGATGTATCAGAGATCTTGTGACTTAGGCCTCGGTGTCCCATTCAAC 37294 Query 70361 ATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGC-CTGAAAGCGCA 70419 ||||| || | |||| || || |||||||| | |||||||| | ||| || | || Sbjct 37295 ATTGCGTCTTACGCATTGTTAACCCATATGATTGCCCTCATTACCGACACTG-AACCACA 37353 Query 70420 CGAGTTCGTAC-ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478 ||||| | | ||| || || || || || ||||| | |||| | || ||||| | Sbjct 37354 TGAGTTTATCCTACA-GATGGGAGATGCGCATGTGTACAGAGATCATGTTGAACCATTGA 37412 Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519 || |||| | ||| ||||||| ||| ||| |||||| || Sbjct 37413 AGACGCAATTGGAAAGGGAGCCTAGAGATTTCCCCAAGTTG 37453 >seq239 Length=110902 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 ||||||||| || || || || || || || || || | ||| |||| | || ||| Sbjct 14745 CGATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 14686 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || |||||||| || || | | || ||| ||| || |||| | Sbjct 14685 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 14626 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 ||||| | || | || || || |||||| | | ||| | ||||||||||| ||| | Sbjct 14625 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 14566 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || ||| | |||| || ||||| |||| | || || || || |||| | Sbjct 14565 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 14506 Query 97104 GGCGAAGAGTTTGA 97117 || ||||| ||||| Sbjct 14505 GGTGAAGAATTTGA 14492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741048241587080