Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq239 235 1e-56
>seq239
Length=110902
Score = 235 bits (260), Expect = 1e-56
Identities = 641/978 (66%), Gaps = 14/978 (1%)
Strand=Plus/Minus
Query 363592 CCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTT 363651
|| || ||||| || ||||| || | |||||||| || ||||| || |||||||
Sbjct 14958 CCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTAC 14899
Query 363652 GACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATC 363711
|| || || |||| ||||||| || ||||||| ||| || || |||||| | ||
Sbjct 14898 GATACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATT 14839
Query 363712 CACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTG 363771
|||||| | ||||| || | |||||| ||| || || ||||| || || |
Sbjct 14838 CACAATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGCATC 14779
Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831
|||| ||||| || | | ||| || || | ||||| || || ||||| |||
Sbjct 14778 ATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGATCAAGGTGGTAACAAG 14719
Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891
|| || || || || || ||||| |||||| || || ||| | ||||| || ||
Sbjct 14718 CGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATT 14659
Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951
|| | |||| ||| || || ||||| | || || |||||||| ||||| || ||
Sbjct 14658 GACTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGATCTTTTCTACGCCCTC 14599
Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTG- 364010
||| | || || | ||| |||||||| || || | | | | ||||| |||||| ||
Sbjct 14598 TGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGG--ACTCTTATGT 14541
Query 364011 --CCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATAC 364068
||| | ||| || || || ||| |||| || | ||||| || | || || ||
Sbjct 14540 GTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACGGTGAAGAATTTGAAAAGCTTTAT 14482
Query 364069 GAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTT 364128
|| | || || | |||| |||| | || || || || |||||||| |||||
Sbjct 14481 GAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTATCAAAGCCCAGAAGCTTTGGTTC 14422
Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188
|||||| | || | || | ||||| || || || || | ||||| ||| | |
Sbjct 14421 GCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTTACATCTGCTACAAGGATGCTGCC 14362
Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAG 364248
||| |||||||||||| ||||||||||||| || | || ||||| ||||| ||
Sbjct 14361 AACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCAAATCCAGTAACCTCTGTACTGAA 14302
Query 364249 ATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308
|| || || || | |||| || || ||| || ||||| ||||| || | || |||
Sbjct 14301 ATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCTGTAATCTTGCTTCTCTTGCTCTT 14242
Query 364309 CCGGCGTTTGTAAAAGATGGTAC-------TTTTGACCACCAGCATCTTTATGACGTAAC 364361
|| || || || | | ||| || | |||| | | | || | || | ||
Sbjct 14241 CCTGCCTTCGT-AGACCTGGAACGTCGCGTCTATGACTTCAAAAAGCTGCACGAGATTAC 14183
Query 364362 CTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGA 364421
| | || ||| || || |||| || ||| | || || |||||| | |||||
Sbjct 14182 CAAGGTTGTTACAAAGAACCTTGACACTGTAATCACCCGTAACTACTATCCAGTGCCTGA 14123
Query 364422 AGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA 364481
||| || || ||||| ||||| || ||||||||||||| ||||| || || ||
Sbjct 14122 GGCCCGCAACTCCAACATGCGCCATCGGCCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGA 14063
Query 364482 CGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGA 364541
|| ||| ||| || ||| | || || || |||| ||| | | || |||| |
Sbjct 14062 CGCTTTCATGGCCCTTCGCATGCCGTTCGACTCCGCTGAGGCTAGGGAACTCAATATCCA 14003
Query 364542 GATCTTTGAAACAATGTA 364559
|||||| || || || ||
Sbjct 14002 GATCTTCGAGACGATATA 13985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303333844825106
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |