Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq239 235 1e-56 >seq239 Length=110902 Score = 235 bits (260), Expect = 1e-56 Identities = 641/978 (66%), Gaps = 14/978 (1%) Strand=Plus/Minus Query 363592 CCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTT 363651 || || ||||| || ||||| || | |||||||| || ||||| || ||||||| Sbjct 14958 CCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTAC 14899 Query 363652 GACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATC 363711 || || || |||| ||||||| || ||||||| ||| || || |||||| | || Sbjct 14898 GATACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATT 14839 Query 363712 CACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTG 363771 |||||| | ||||| || | |||||| ||| || || ||||| || || | Sbjct 14838 CACAATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGCATC 14779 Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 |||| ||||| || | | ||| || || | ||||| || || ||||| ||| Sbjct 14778 ATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGATCAAGGTGGTAACAAG 14719 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 || || || || || || ||||| |||||| || || ||| | ||||| || || Sbjct 14718 CGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATT 14659 Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951 || | |||| ||| || || ||||| | || || |||||||| ||||| || || Sbjct 14658 GACTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGATCTTTTCTACGCCCTC 14599 Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTG- 364010 ||| | || || | ||| |||||||| || || | | | | ||||| |||||| || Sbjct 14598 TGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGG--ACTCTTATGT 14541 Query 364011 --CCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATAC 364068 ||| | ||| || || || ||| |||| || | ||||| || | || || || Sbjct 14540 GTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACGGTGAAGAATTTGAAAAGCTTTAT 14482 Query 364069 GAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTT 364128 || | || || | |||| |||| | || || || || |||||||| ||||| Sbjct 14481 GAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTATCAAAGCCCAGAAGCTTTGGTTC 14422 Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188 |||||| | || | || | ||||| || || || || | ||||| ||| | | Sbjct 14421 GCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTTACATCTGCTACAAGGATGCTGCC 14362 Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAG 364248 ||| |||||||||||| ||||||||||||| || | || ||||| ||||| || Sbjct 14361 AACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCAAATCCAGTAACCTCTGTACTGAA 14302 Query 364249 ATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308 || || || || | |||| || || ||| || ||||| ||||| || | || ||| Sbjct 14301 ATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCTGTAATCTTGCTTCTCTTGCTCTT 14242 Query 364309 CCGGCGTTTGTAAAAGATGGTAC-------TTTTGACCACCAGCATCTTTATGACGTAAC 364361 || || || || | | ||| || | |||| | | | || | || | || Sbjct 14241 CCTGCCTTCGT-AGACCTGGAACGTCGCGTCTATGACTTCAAAAAGCTGCACGAGATTAC 14183 Query 364362 CTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGA 364421 | | || ||| || || |||| || ||| | || || |||||| | ||||| Sbjct 14182 CAAGGTTGTTACAAAGAACCTTGACACTGTAATCACCCGTAACTACTATCCAGTGCCTGA 14123 Query 364422 AGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA 364481 ||| || || ||||| ||||| || ||||||||||||| ||||| || || || Sbjct 14122 GGCCCGCAACTCCAACATGCGCCATCGGCCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGA 14063 Query 364482 CGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGA 364541 || ||| ||| || ||| | || || || |||| ||| | | || |||| | Sbjct 14062 CGCTTTCATGGCCCTTCGCATGCCGTTCGACTCCGCTGAGGCTAGGGAACTCAATATCCA 14003 Query 364542 GATCTTTGAAACAATGTA 364559 |||||| || || || || Sbjct 14002 GATCTTCGAGACGATATA 13985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303333844825106