Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq774 140 4e-28
seq239 109 7e-19
seq358 84.2 3e-11
>seq774
Length=91181
Score = 140 bits (154), Expect = 4e-28
Identities = 183/253 (72%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719
||| || || ||| ||| ||||||||||||| | || | ||||| || || || ||
Sbjct 64347 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 64406
Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779
|| ||||| || || ||||| |||||||| || |||||||| || || ||||| |||||
Sbjct 64407 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 64466
Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 32836
|| || || || || ||||| ||||| |||| ||| || ||| | | ||||
Sbjct 64467 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 64526
Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896
||||| ||||||| |||||||||||| | |||||| || || || ||||| |
Sbjct 64527 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 64586
Query 32897 AAAGAGATAGTTT 32909
|||||| |||||
Sbjct 64587 AAAGAGGAAGTTT 64599
>seq239
Length=110902
Score = 109 bits (120), Expect = 7e-19
Identities = 486/775 (63%), Gaps = 55/775 (7%)
Strand=Plus/Plus
Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051
||| || || || || |||| | | | |||||||| || || | |||||||| | |
Sbjct 14491 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 14550
Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63110
||| || || || | || || ||||| || ||||| | ||||| || || || ||
Sbjct 14551 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 14610
Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63169
| ||||| | | || ||||| || || ||||| ||||| || | ||| |
Sbjct 14611 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 14668
Query 63170 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63229
| | ||||| ||||| || || | || ||||| | | ||||| || ||||| ||
Sbjct 14669 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 14728
Query 63230 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 63289
|| ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || || |||
Sbjct 14729 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 14788
Query 63290 GATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAG 63348
|| ||||||||| || | || ||| || | ||||| ||||| ||| ||| ||
Sbjct 14789 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 14847
Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408
||| || || || || | || ||||| || || || | ||||| ||||| ||
Sbjct 14848 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 14907
Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468
|| || |||||| ||||| | || || || ||||||||| | || |||
Sbjct 14908 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 14967
Query 63469 TCCCGCATTAAATA---------------------AG----------------------- 63484
|| || || || | ||
Sbjct 14968 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 15027
Query 63485 -----GTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63539
||||| ||||| || || || | | ||||| | ||||| || ||||| ||
Sbjct 15028 TTACAGTAGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 15087
Query 63540 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63599
|| ||| || | | ||| || || || ||||| ||||| | |||||||||||| |
Sbjct 15088 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 15147
Query 63600 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63659
|| || |||||| || || | | | ||| ||| | || | ||| || ||||| |
Sbjct 15148 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 15207
Query 63660 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714
| |||||||| | |||||||| || || |||||| | |||| ||| |||||||
Sbjct 15208 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT 15262
>seq358
Length=268391
Score = 84.2 bits (92), Expect = 3e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 32682 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 32741
||||| || ||||| || || ||||| ||||| || ||||| ||||| | || | |||
Sbjct 37399 CCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCTCTCTTC 37458
Query 32742 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 32801
|| | ||| || || | ||||| || |||||||||||||| ||||| || |||||
Sbjct 37459 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 37518
Query 32802 GCAATAAGTCT 32812
|| | |||||
Sbjct 37519 GCCACCAGTCT 37529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633622630166800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |