Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq774 170 4e-37
seq872 104 4e-17
seq664 102 2e-16
seq622 100 5e-16
>seq774
Length=91181
Score = 170 bits (188), Expect = 4e-37
Identities = 176/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| || | || || |||||||| |||||||| || ||||||||
Sbjct 78758 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAA 78699
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | ||||| |||||||| || | || || ||||| || ||
Sbjct 78698 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 78639
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
|| || ||||||||||| ||||| |||||||| |||||||| || ||| ||||| ||
Sbjct 78638 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC-GCTCGATTCGAC 78580
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||| | ||| |||||||| || |||||||| |||||||| || |||||
Sbjct 78579 TTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 78532
Score = 145 bits (160), Expect = 1e-29
Identities = 158/207 (76%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| || | || || |||||||| ||||| || || ||||||||
Sbjct 79546 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 79487
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | || || |||||||| ||||||| ||| || || || ||
Sbjct 79486 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 79427
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
|| || ||||||||||| ||||| ||||||||| |||||||| || ||| ||||| ||
Sbjct 79426 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATC-GCTCGATTCGAC 79368
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAG 68440
||| | ||||| || || ||||| ||
Sbjct 79367 TTCAAGAGTGATTGTCTTACCCGTAAG 79341
Score = 138 bits (152), Expect = 2e-27
Identities = 136/176 (77%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| |||||||| ||||| |||||||| | |||||| || || || || | || ||| |||
Sbjct 78428 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 78369
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| || ||||| |||||||| ||||||||||| |
Sbjct 78368 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 78309
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || ||||| | ||||| || || || ||||| ||||||||||| || |||||
Sbjct 78308 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 78253
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| || || || || ||||||||||| || |||||
Sbjct 79265 CCACCACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAA 79206
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | || || || || || || | || ||| || || || |||
Sbjct 79205 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 79146
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||||||||| |||||||| ||||| ||| ||||| ||||| | || || |||
Sbjct 79145 ATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACT 79086
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| || ||||| || | |||||||| || ||||||||
Sbjct 79085 TCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 79039
Score = 129 bits (142), Expect = 1e-24
Identities = 134/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
||||| || | || | ||||| || | ||||| |||||||| || | || |||||||
Sbjct 78935 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78876
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| |||||||| |||||||| || |||||||| |
Sbjct 78875 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 78816
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || | ||||| || ||||| || || ||||||||||| ||||||||
Sbjct 78815 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78760
>seq872
Length=80307
Score = 104 bits (114), Expect = 4e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| || || || ||||| || || || | |||||| |||||||| || | || ||||||
Sbjct 65406 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGG 65465
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| || ||||| | |||||| ||||||||||| |
Sbjct 65466 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 65525
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || || || | ||||||||| ||||| || ||
Sbjct 65526 GACTCAACCTCGAGGGTGATGGTCTTTCCGGTAAG 65560
>seq664
Length=11647
Score = 102 bits (112), Expect = 2e-16
Identities = 266/401 (66%), Gaps = 10/401 (2%)
Strand=Plus/Minus
Query 176132 GGTGGGAACATAGTATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAG 176191
|||||| | | || || |||||||| || || || || | | |||||| ||||
Sbjct 8122 GGTGGGCATGAAATAATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAA 8063
Query 176192 ACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATA 176251
| || || || |||||| || | || || | | | || | ||||||||||||
Sbjct 8062 CCCGTCATCTGCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTTTGTGAAGATATA 8003
Query 176252 CCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAG 176311
| ||||| || ||| || || || ||| || | ||| ||||| ||| |||
Sbjct 8002 ACGGGCAGAAGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATC 7943
Query 176312 AAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTG 176371
|||| ||||||||| || || ||| ||| ||| || | ||||| |||| | |
Sbjct 7942 CAGCAGATTGATGTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTG----G 7887
Query 176372 GAG--AGAC--GCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACT 176427
|| | || || || || |||||||| ||| ||||| ||| ||||||| ||
Sbjct 7886 AAGTCAAACTGGCTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCT 7827
Query 176428 GCGCGACTTTGATTTCTTGTACGAGGTTGCGCTT-CAACGCCGAGAACAGAATCTTCCGC 176486
| ||||| |||||||||| |||||| ||||| ||| | | || |||| ||| |||
Sbjct 7826 GAGCGACCTTGATTTCTTTGGTGAGGTTTCGCTTGAAACAACCA-AAGAGAACCTTTCGC 7768
Query 176487 TGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACG 176527
|| || || ||||| ||| | || || ||||| || ||
Sbjct 7767 TGACCAGGTTTGAGACCGTCGGCCACAGATGGAATCGATCG 7727
>seq622
Length=185617
Score = 100 bits (110), Expect = 5e-16
Identities = 441/683 (65%), Gaps = 30/683 (4%)
Strand=Plus/Plus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| ||||| | ||||||| ||| || ||| |||||||| ||||| |||||||||
Sbjct 53476 TATCGCCAGAGCATGTACTCAAGGGGAGTAGAGTCAAGGTGGTTGTCAATGTGGTGGAAA 53535
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACAC---AGAGCCCCGA 225094
|| || ||||| ||||| | ||| || ||| || |||||||| || | |||| |
Sbjct 53536 GCGTGTTGGGCGACGTAACCAATGACCAAGTTAGGGTGCTTCCAGACCTGACCGCCCAGG 53595
Query 225095 GTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154
| || | | ||| || ||||||| ||| | || |||| || || | ||| |||||
Sbjct 53596 TTGGGCTCAGTCTCACCAGTGAGGAGCTTAACAAGGGTAGATTTACCGGAACCGTTGGGA 53655
Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCT---GCGAGTTCACGT-----TGCTGA 225206
|||| | | ||| || ||||| | | |||| | ||| | ||| |||||
Sbjct 53656 CCAAGAATGGCAACTCGAGATGAGAGAGACACCTGGAGAGAGATGTCGTAGAGCTGCTG- 53714
Query 225207 AGATCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGT 225266
||| || |||| |||| || | ||| |||| ||| | | | |
Sbjct 53715 -GATAGAAGAACCAG---GGTACTGGAATGAAACGTTTCGCATCTTGAGCAAAGACTTCT 53770
Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACT--TGGT-CACCG 225323
|||||| | | ||| || |||| || | || | || ||| | || | | |
Sbjct 53771 CCTTGGTCTTCACACCATCAAGGAGGGGAGGGTTAGGAAGCTTGAACTGGTAGTCCTCAG 53830
Query 225324 CGTCCTTCAGGTCGTAGTAAGATGCAGCCTC-GGGTCGCTTTGCCACGAAAGCAGACAGG 225382
|| | | || | |||||| || |||||| ||| | || |||||| | |||
Sbjct 53831 CGACATCGAGTTGGTAGTAGGACTTAGCCTCAGGGACATGCTG-GACGAAATCCTCAAGG 53889
Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442
|| || ||| | || | | ||||| ||| || ||||| || | || ||| |
Sbjct 53890 TTACCAGGGTACCTCTTCAACTTGAAGTTGTT---AAGATGAAGAA-CGTCGGTAACAGT 53945
Query 225443 GC-GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACA-CGTTCGTCAGGCCC 225499
| || ||||||| |||||||||| || ||||||||||| | ||| || || |||
Sbjct 53946 TCGGTTAAGGAAGTCAGAGTCGTGAGAGACAATGATGGAGGTACATCG--AGTAAGGGAG 54003
Query 225500 TTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559
|||| | |||| ||||| | ||||| || |||| |||||| ||||| |||||
Sbjct 54004 GTGAGATAGTTGATCAGCCAGTCAACGTTAAGAACATCCAAGTGGTTGGTAGGCTCGTCG 54063
Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619
|| | ||||| || || | | ||| || || || | |||| |||||||| |||||
Sbjct 54064 AGCAAGAGGATATCGGCCTTGAAGAGAATAGCTCGGGCAAGAGCAAGCTTCATCTTCCAA 54123
Query 225620 CCCCCGGACAGGGAGCCGATTGA 225642
|| || || || || || || ||
Sbjct 54124 CCGCCAGAAAGAGAACCAATGGA 54146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921608771508760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |