Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1049 147 3e-30
seq239 129 7e-25
seq329 118 1e-21
seq948 93.3 5e-14
seq689 91.5 2e-13
seq664 84.2 3e-11
>seq1049
Length=281
Score = 147 bits (162), Expect = 3e-30
Identities = 196/270 (73%), Gaps = 2/270 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||| | ||| || || || ||||| || ||||| || ||||||||
Sbjct 13 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTTGACCTCGAAGATACCC 72
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| ||||| | || | || ||||| || ||||||||||| ||||| || || | |||
Sbjct 73 TCCTCAATAGTCAAAAGAGAGACATCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 132
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
||| | || | || ||||| || |||||||| |||||||| || || || || ||
Sbjct 133 TTCTTCTCACCCTCAGACTTCTTGTCAAGACCGTAAGCGATAGCAGCGGCAGTAGGCTCG 192
Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
|| || |||| || |||| | || || ||||| | | || || || || || || ||
Sbjct 193 TTGATGATACGGAGGACA-TCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGCCTGACG 251
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725
||| || ||||| |||||||| ||||| ||
Sbjct 252 TTGAGAGTCGTTGAAGTAGGCGGGGACGGT 281
>seq239
Length=110902
Score = 129 bits (142), Expect = 7e-25
Identities = 703/1115 (63%), Gaps = 23/1115 (2%)
Strand=Plus/Plus
Query 104870 CCCACATATCGAATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAG 104929
||||||| ||| | ||||| ||||| ||| | || || || | | | |||||| |
Sbjct 13878 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 13937
Query 104930 GACCGTACATTTCGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGA 104989
||| || ||||||||||| || |||| || || | |||||||| || || ||||
Sbjct 13938 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 13997
Query 104990 ATATATCAATGTTGAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAACATGATAA 105049
| || | || ||||||| || | || | || |||| | ||| | | || |
Sbjct 13998 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 14057
Query 105050 ACACGTCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTT 105109
| |||| || |||||||| ||||||| ||| | || | || ||||| || || |||
Sbjct 14058 AAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGA--GTT 14115
Query 105110 TCCCGTTTTCGGT--TGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAAC 105167
| | | || ||| || |||| || || ||| | ||| ||||||
Sbjct 14116 GCGGGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 14175
Query 105168 CATTTTCGTAA-CACGATGTAACTCTTCATGGT--TAAACTCGTTCTTCTCGACATCAAC 105224
| || |||| | || || | || || || || || || ||| | || ||
Sbjct 14176 AACCTTGGTAATCTCG-TGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGG--TCTAC 14232
Query 105225 GTATTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAA 105284
| | || | || | || || |||||||| || || ||| || | | | |
Sbjct 14233 GAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 14292
Query 105285 CTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGA 105344
||||| ||||| ||||| | || ||||| || ||||||| ||| || ||||| ||
Sbjct 14293 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 14352
Query 105345 CTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTT 105404
||| || || || ||||| || || ||| || || || |||| | |
Sbjct 14353 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTC 14412
Query 105405 AATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTC 105464
| || || ||||| || | ||| | | ||| || | | || | ||
Sbjct 14413 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 14472
Query 105465 GTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTG 105524
||| |||| ||||| | |||||| |||| |||||| ||||| | ||| || ||
Sbjct 14473 GTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTC 14532
Query 105525 ATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGG 105584
| ||||| | | | ||||| ||||||||||| || || |||||||| | ||| |
Sbjct 14533 GGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGA 14592
Query 105585 AATCCACATGGCTGAAAAGAGGTCTCGACACCTCG--CCTCTTCATCACCTTGATTCAAA 105642
||||| | ||| | || || || ||| |||| |||| || | ||| || |||
Sbjct 14593 GATCCAGAGGGCGTAGAAAAGATCACGAG--CTCGTACCTCCTCCTTACCATGGTTCTTC 14650
Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702
| | || | || || | | ||| |||||||| || || | ||||| || | |
Sbjct 14651 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 14710
Query 105703 CCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGT 105756
|| | ||||| || |||||| || |||| || || | || || ||||
Sbjct 14711 CC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 14767
Query 105757 AACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCA 105816
| ||| ||||| || || | ||| ||||| || || ||| | || || |||
Sbjct 14768 AGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCA 14827
Query 105817 CGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCT 105876
|| | || ||||| ||| | |||||||| || || ||| ||| | |||||
Sbjct 14828 CGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTC 14887
Query 105877 TTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGAT 105936
|| | |||||||| ||||| || || || ||||| | || | ||||| || |||
Sbjct 14888 TTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGAT 14947
Query 105937 GACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971
|||||||| |||| ||| ||||| || ||||| ||
Sbjct 14948 GACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 14982
>seq329
Length=34135
Score = 118 bits (130), Expect = 1e-21
Identities = 266/395 (67%), Gaps = 6/395 (2%)
Strand=Plus/Plus
Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390
||||| | |||||||| || |||||||| || | || || || || | ||||| | |
Sbjct 18709 GAAGAGAGAGTTCGCTTAGCACGCTCACAAGCAGATCTCAATCGTCGCAAAGCACGGGCG 18768
Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGT 7450
| | || || || ||| || | || ||||| | |||||| |||||
Sbjct 18769 TCGTCAGAGATGTCAAGCTTGGTCTTCCTCTTGAACTCAGCCTTGAAGTGCTCCAGGAGG 18828
Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510
| ||||| || |||||||| | || || || || || || || ||||| |||
Sbjct 18829 TTGTTGTCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCAGTGGCCTTGACAGAGAAG 18888
Query 7511 ATACCT--CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA 7568
| ||| || | |||| | | | || ||||| || ||||||||||||| ||| || |
Sbjct 18889 A--CCTTGCCCTGAATGGTAAGAAGAGAGACATCGAAAGTACCACCACCCAAGTCGAAGA 18946
Query 7569 TGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628
|||| ||||| || || || | |||| || |||||||| || ||||| || || |
Sbjct 18947 TGAGGACGTTTCGCTCCTCCTCGGTCTTCTCGTCAAGACCGTAGGCAATAGCGGCAGCAG 19006
Query 7629 TTGGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687
| ||||| || |||||||| || || || || || ||||| | | || || || ||
Sbjct 19007 TAGGTTCGTTGATAATACGGAG-CACCTCAAGACCGGCAATGGCACCGGCGTCCTTAGTG 19065
Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722
|| | || || || ||||| |||||||| || ||
Sbjct 19066 GCGAGACGCTGAGAGTCGTTGAAGTAGGCAGGAAC 19100
>seq948
Length=64890
Score = 93.3 bits (102), Expect = 5e-14
Identities = 141/200 (71%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936
|| ||||| | | ||| | ||||| ||| | || |||| ||| ||||||||
Sbjct 243 ATGACCTTGAAAGGCCAGTGCTTCATGTCGGCCTGAACCTCAGCATCCTCAAACTTTCGG 302
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
|| || | ||||| || |||||||| ||||| | ||||||||||| ||||||||
Sbjct 303 CCAATCAATCGCTTGGCGTCAAAAACAGTGTTGTAAGGGTTCATGGCGACCTGGTTCTTG 362
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| ||||| ||||| | || || | || | || |||||||| || || || |||
Sbjct 363 GCAGCGTCACCGATCAATCGCTC---AGAGTCGTTGAAAGCGACGTAAGAGGGAGTGGTT 419
Query 8057 CGATTCCCTTGGTCGTTCGC 8076
|| || || |||||||||||
Sbjct 420 CGGTTACCCTGGTCGTTCGC 439
>seq689
Length=10867
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135
||||||||||||| |||||||||||||||||| | || || ||||| || || || || |
Sbjct 10370 CAATAATTTCTACCCGGTCGTTTTGCCAGACGGCAACACATGAATAGGTAGTGCCCAAGT 10311
Query 8136 CAATACCGATTGCTTGAGTCATTTT 8160
|||||||||| |||| ||||| ||
Sbjct 10310 CAATACCGATAGCTTTTGTCATGTT 10286
Score = 86.0 bits (94), Expect = 8e-12
Identities = 140/201 (70%), Gaps = 3/201 (1%)
Strand=Plus/Minus
Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935
||| ||||| | | ||||| ||||| ||| | || || | || ||| || |
Sbjct 10622 GATTACCTTGAAAGGCCAATGCTTCATGTCGGCCTGAACTTCGGCATCGTTAAATTTACG 10563
Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995
||||| | ||||| ||||| ||||| ||||| | || ||||| || |||||||||
Sbjct 10562 GCCGATCAACCGCTTAGCATCGAAAACAGTGTTGTAAGGATTCATTGCAACTTGGTTCTT 10503
Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055
||| || || |||||||| ||||| | || | || || || || ||||| || ||
Sbjct 10502 CGCGGCATCACCGATAAGTCGTTC---AGAGTCATTGAAAGCAACATATGATGGTGTTGT 10446
Query 8056 TCGATTCCCTTGGTCGTTCGC 8076
|||||| || || ||||| ||
Sbjct 10445 TCGATTGCCCTGATCGTTGGC 10425
Score = 82.4 bits (90), Expect = 1e-10
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 7685 GTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACT 7744
|| || || ||||| || ||||| |||||||| ||||| || || || || | | |||
Sbjct 10867 GTAGCCTGACGTTGAGAGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCCTTGGAGACG 10808
Query 7745 TTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATC 7804
| |||||| || | || || | || ||||| || ||||||||||| || ||||||
Sbjct 10807 GTGCCACCGAGGTAAGCCTCAGCAGTCTCCTTCATCTTAGTAAGAACCATGGAAGAAATC 10748
Query 7805 TCTTCAGCCG 7814
||||||| ||
Sbjct 10747 TCTTCAGGCG 10738
>seq664
Length=11647
Score = 84.2 bits (92), Expect = 3e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 183338 GCGTCTTTACCACCCATGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATA 183397
|||||||||||||| ||||| ||||||||||| || || || || | ||| ||
Sbjct 7989 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 7930
Query 183398 TTATTCGACCCCGTAAAATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCA 183457
|| || || || || |||||||| ||||| || | |||| | |||||
Sbjct 7929 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 7870
Query 183458 CCGTGGTGATACGATGTTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTC 183516
|| |||||||| | ||||| ||||||||||| |||| | || || ||||| |||||
Sbjct 7869 CCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 7811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635123407973720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |