Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq239 159 4e-34
seq664 122 1e-22
seq774 114 2e-20
>seq239
Length=110902
Score = 159 bits (176), Expect = 4e-34
Identities = 714/1122 (64%), Gaps = 37/1122 (3%)
Strand=Plus/Plus
Query 106095 CCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154
||||||| || | ||||| | || | || |||||||||| || | | |||||||
Sbjct 13878 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 13937
Query 106155 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 106214
||| | || || | ||| || |||||| || | ||||| || || || || |
Sbjct 13938 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 13997
Query 106215 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 106269
|||| | ||| | ||| | || ||| | || || || |||| || | || |
Sbjct 13998 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 14057
Query 106270 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 106329
|| | || || ||||| || ||||| | ||||| ||| | || ||||| || ||
Sbjct 14058 AAG-----CGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGA 14112
Query 106330 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386
|| || || |||| || ||||| | || | | || || || || || ||
Sbjct 14113 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTT 14169
Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446
||||||| ||| || || || || || |||| | ||| | |||| || |
Sbjct 14170 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTC 14229
Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506
|| | ||||| || | || || | ||| || ||||| ||||| | |
Sbjct 14230 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 14289
Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 106563
||||| | ||||| ||||| | ||| ||| || || || || | | ||||||
Sbjct 14290 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 14346
Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623
||| ||| |||| |||||||||||| ||||| || || ||||| || ||
Sbjct 14347 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTG 14406
Query 106624 TGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGG-CGTTGGCCCGT-CC 106680
| || ||| || || ||| | | || | |||| | | | | || ||| | ||
Sbjct 14407 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTT--CCCTTGCC 14463
Query 106681 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 106740
|| | |||||| | || || |||||| || ||||| |||||| || ||
Sbjct 14464 CTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCC 14523
Query 106741 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 106800
|| || | | ||||| | ||||| ||| | ||| | || || |||||||||||
Sbjct 14524 AGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAA 14583
Query 106801 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 106860
||| || | ||||| |||| | || ||||| | | || |||| || | ||| ||
Sbjct 14584 AAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATG 14643
Query 106861 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920
||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| ||
Sbjct 14644 GTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGC 14703
Query 106921 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974
|| | || ||||| ||| |||||| || || || |||||||||| |
Sbjct 14704 GAAGGCACC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTA 14760
Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 107034
| || ||||| ||||| || || | || | |||||| || || ||| ||
Sbjct 14761 AGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC 14820
Query 107035 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 107094
|| || | | || || ||||| | |||||||| || || ||| ||||| || ||
Sbjct 14821 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGC 14880
Query 107095 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 107154
||| | | ||||| | |||||||| | || ||||| ||||| |||| | |||||
Sbjct 14881 ACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 14940
Query 107155 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 107196
||| ||||| || |||| || ||||| || ||||| ||
Sbjct 14941 GCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 14982
>seq664
Length=11647
Score = 122 bits (134), Expect = 1e-22
Identities = 286/428 (67%), Gaps = 8/428 (2%)
Strand=Plus/Minus
Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350
|| ||||||||||| || | ||||| | | |||||||| | ||| |||||| || |
Sbjct 8166 CCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATAA 8107
Query 168351 TCTGGTTCAATTGAGCGC---CCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGA 168407
||||||||||| |||| ||||| || ||||||||||||| | | |||||| |
Sbjct 8106 TCTGGTTCAAT---GCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCA 8050
Query 168408 GGATCAAAGATCTTGCGAG-CCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAGA 168466
|| | ||||| |||| | || ||| ||| |||||||| || || | | ||
Sbjct 8049 GGGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGGGCAGAAGC 7991
Query 168467 AGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAAT 168526
|| || |||||||| ||||| ||||||||||| || || || || || || ||
Sbjct 7990 TGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGAT 7931
Query 168527 GTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTC 168586
|||||| || | ||| | ||| || ||||| ||| | || ||||
Sbjct 7930 GTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTC 7871
Query 168587 ACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTC 168646
||||||||| || || | || |||| || || | || || || || ||||| |||||
Sbjct 7870 ACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 7811
Query 168647 ATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACC 168706
| |||| || | ||| ||| || | | || || | ||| ||| ||||||||
Sbjct 7810 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 7751
Query 168707 ATCCGCCA 168714
|| ||||
Sbjct 7750 GTCGGCCA 7743
>seq774
Length=91181
Score = 114 bits (126), Expect = 2e-20
Identities = 123/160 (77%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || |||||||||||| ||||| || || || || || |||||| || ||
Sbjct 64350 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 64409
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 117391
||||||||||| |||||||| | ||| | || | ||| ||| || || ||||||||||
Sbjct 64410 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGC-GAAAGAACCAGAGAAGAAGA 64468
Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431
|||||||||| ||||| |||| || |||||| ||||
Sbjct 64469 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 64508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589972075658920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |