Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq358 120 3e-22
seq239 84.2 2e-11
>seq358
Length=268391
Score = 120 bits (132), Expect = 3e-22
Identities = 105/131 (80%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041
||||| || ||||| ||||| || || |||||||| | |||||||||| ||||| ||
Sbjct 37399 CCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCTCTCTTC 37458
Query 19042 tttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAA 19101
||||||||||| || | |||||| || ||||||||||| || ||||| || |||||||
Sbjct 37459 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 37518
Query 19102 GCAACTAGTCT 19112
|| || |||||
Sbjct 37519 GCCACCAGTCT 37529
>seq239
Length=110902
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072
||||| | ||||| ||||||||| | |||| ||||||||||||| |||||| |
Sbjct 13319 GTTCGAAGGTAATAGCAACCAGTCTTGAGACCTCGCTTCCATCCATAGAAGTGCATAGAA 13378
Query 47073 GTTAATTTAGAATAACTA-GGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAAT 47131
|| | | || ||| | || | || | ||| || ||||| || || |||||||||
Sbjct 13379 GTGAGCTGAG-GGAACGAGGGGTTGGAGAGATGGATGTTAAGGGACTGGGACTGATCAAT 13437
Query 47132 AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGT 47191
|| || || | |||||||| | || | | | || | || | |||||||| |||||
Sbjct 13438 GAAAGCTCCACGGTCAGCTGCAAGGTCGATGACAGCCTTCTGCGAGATCTCCCAGACTGT 13497
Query 47192 TTTATAAATTTGTTTAATGTCTTCTGGGAGATT 47224
| |||||||| ||| | || || |||| |||
Sbjct 13498 TCGATAAATTTTTTTGAGATCATCGGGGATATT 13530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562100487816120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |