Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq940 129 5e-25 >seq940 Length=44898 Score = 129 bits (142), Expect = 5e-25 Identities = 239/346 (69%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 30102 || |||||||| || | | ||| || |||||||| ||| |||||| ||||| ||| Sbjct 37093 TTTGGGTTCCAAGCCGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGGTGTCG 37034 Query 30103 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATG-TCCGTGTA 30161 | | ||||||| || || || || | || ||||| ||| || || ||||| Sbjct 37033 ATTACCCTTTGCAGTTGGTCGACTCCTTTGTCCTTATAGTC-GCCGTCGGCATCAGTGTA 36975 Query 30162 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30221 ||| || || ||||| |||||||||||||||||||| |||||||| || || || || Sbjct 36974 CTCGGCACCAAAATGTCTCCACTGGAACCCGTACACAGGTCCCAGATCACCTTCCCTTCT 36915 Query 30222 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30281 ||| ||| || ||| |||| || ||| || ||||| | ||||||||| ||| Sbjct 36914 GTGGCCGAGCCCGACCTTCTCCAGGAATTCTTTGCTTCCGTTACCATCCCAGATCCCTAC 36855 Query 30282 CCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30341 |||| |||||| | |||| || || | || |||||||||| ||||| | Sbjct 36854 GCCCTGACTAGAGAGCACCTTGGCGTCGGTACAACCAGAAACGAACCACAAAAGCTCGGC 36795 Query 30342 CACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 | |||| | | || ||||| | |||||||| ||||| |||| Sbjct 36794 AATGACG--CCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 36751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408611708628059