Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq239 134 2e-26
seq664 129 7e-25
seq774 114 2e-20
>seq239
Length=110902
Score = 134 bits (148), Expect = 2e-26
Identities = 708/1119 (63%), Gaps = 31/1119 (3%)
Strand=Plus/Minus
Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385
|| ||||| || ||||| || |||| || ||||| |||||||| | |||| |||
Sbjct 14982 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 14923
Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445
|| ||||| || | |||||||| | ||||| | | ||||| || ||||| |||
Sbjct 14922 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 14863
Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505
|| || |||||||| | ||||| || || | | || || || ||| ||
Sbjct 14862 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 14803
Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565
|| |||||| | || | || || ||||| ||||| || | | |||||||||| ||
Sbjct 14802 ACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGA 14743
Query 75566 TATGTAAATCAAGCGGGGCGTCGCAAGGG-----GT-CCATCGCGGTCTACTTGGAACCA 75619
|| || |||||| || | |||| | || || |||| |||| | || ||
Sbjct 14742 TACGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 14686
Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679
||||| || ||| | | || ||| |||| ||| | ||||| ||| | || ||||
Sbjct 14685 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 14626
Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739
|| | | ||||| || | |||| ||||| | || |||||||||||||| || ||
Sbjct 14625 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 14566
Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799
| ||| | ||| ||||| | ||||| | | || || || || ||||||
Sbjct 14565 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 14506
Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGCCAATG-CGA 75857
||||| || |||||| || || | || | ||||| |||| | || || | |
Sbjct 14505 GGTGAAGAATTTGAAAAGCTTTATGAGAGCTACG-AGAGGCAGGGCA-AGGGAAGGAAAA 14448
Query 75858 CTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916
|| | |||| | || | ||||| || || ||| | | || || ||||||||
Sbjct 14447 CTATCAAAGCC-CAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTC 14389
Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976
|| || || |||||||||||| ||| ||| ||||||||| | | || ||
Sbjct 14388 CCTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACC 14329
Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036
||||| | || || || || ||||| | ||||| | | ||||| |||
Sbjct 14328 ATCAAATCCAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCT 14269
Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTT 76096
|| || ||| | || || | || ||||| | || | || |||| | |
Sbjct 14268 GTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTGGAACGTCGCGTCTAT 14209
Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156
|| | |||| || || || || || ||| ||||||| || || || || || ||
Sbjct 14208 GACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTAATC 14149
Query 76157 GACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213
| | || | ||||| || |||| || || || || || ||||| || | |||
Sbjct 14148 ACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGGCCT 14092
Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-----T 76268
||||| | ||||| || ||||| || || | ||| || | || |||| |
Sbjct 14091 GTTGGTCTTGGTGTCCAGGGTCTTGCCGACG-----CTTTCATGGCCCTTCGCATGCCGT 14037
Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328
| || || | ||| || | ||| | ||| | ||||| || || || || |||||
Sbjct 14036 TCGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGG 13977
Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388
| || |||||| || ||| | || || | ||| ||||||| | | || ||||
Sbjct 13976 CGCTTGAGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTT 13917
Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427
||||| || | || | ||||||| || |||||||
Sbjct 13916 CTCCCATCTCTAAGGGTATCCTTCAGTACGACATGTGGG 13878
>seq664
Length=11647
Score = 129 bits (142), Expect = 7e-25
Identities = 288/427 (67%), Gaps = 4/427 (1%)
Strand=Plus/Plus
Query 14358 TGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATC 14417
|||| || |||||||| ||| ||| | || || | | || ||| ||| | || |
Sbjct 7743 TGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTTGTTTCAAGCGAAACC 7802
Query 14418 TCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACC 14477
||| | ||||| ||||| || || || || | || || |||| || | || || |
Sbjct 7803 TCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGGAGAAAACCGCATATC 7862
Query 14478 ACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTT 14537
|||||||||||| || | ||| ||||| || ||| | ||| | ||
Sbjct 7863 ACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGCTTAGCACAAAACTTCGTCGGCA 7922
Query 14538 CAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTA 14597
|||||||| || || || || || || ||||||||||| ||||| |||||||
Sbjct 7923 GTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTCGTCTTGCAGGTGGTA 7982
Query 14598 AGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGA-GGCTCGCAAGATC 14656
| || || || | | || || |||||||| ||| ||| ||| | |||| |||
Sbjct 7983 AAGACGCAGCTTCTGCCCGTTATATCTTCACAAACCTT-CCACGGATGACTCGAGCAATC 8041
Query 14657 TTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGG-ACGCTCCATTGA 14715
|| | ||| |||||| | | ||||||||||||| ||| ||||| | || ||||||
Sbjct 8042 TTCCACCCTGCAGATGACGGGTTGCTCAACTACTTGGTCGAGGATGGTATGC-GCATTGA 8100
Query 14716 ACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGG 14775
|||||| | || |||||| || | |||||||| | | ||||| | || ||||||||
Sbjct 8101 ACCAGATTATTTCATGCCCACCGTTCCAATGGTATTGATCAATGGTGCAGATGGTATCGG 8160
Query 14776 TACGGGT 14782
||| |||
Sbjct 8161 TACTGGT 8167
>seq774
Length=91181
Score = 114 bits (126), Expect = 2e-20
Identities = 123/160 (77%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
|||| |||||| || |||| ||||| |||||||||||||||||||| || || |||
Sbjct 64508 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 64449
Query 65131 TGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189
||| | || | ||| | |||||||| ||||||||||| || || |||||| || ||
Sbjct 64448 -GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGA 64390
Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
|| || || ||||| |||||||||||| || ||||||
Sbjct 64389 GCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 64350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596560778227040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |