Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq239 116 5e-20 seq774 93.3 5e-13 seq911 89.7 6e-12 >seq239 Length=110902 Score = 116 bits (128), Expect = 5e-20 Identities = 177/252 (70%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || ||||| || || ||| ||| | | |||||||| || | || ||||||||| Sbjct 14732 TGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTGGAG 14791 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | || ||||| || || | ||||| ||| || || | ||||| | || || Sbjct 14792 TAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCA 14851 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||| | || || ||||| || |||||||| || || Sbjct 14852 ATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCA 14911 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||||| |||||||| ||||||| ||||| || || |||| || | | || ||| Sbjct 14912 ATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCG 14971 Query 1630306 GCGTTGAAGAGC 1630317 |||||||| ||| Sbjct 14972 GCGTTGAAAAGC 14983 >seq774 Length=91181 Score = 93.3 bits (102), Expect = 5e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 |||||||||||||| |||||| | ||| ||||||| |||||| | || ||||||| Sbjct 64030 CTCGAAAAAGTTGGCCTTGCCTTGGAGAGAGATCATCTCCATAAAGTCAAAGGGGTTGGC 64089 Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836 | || | ||| ||| || | | | || || |||||||| |||||||| || Sbjct 64090 AGAGTTCCAAATCTTCTCGTTGCCCAAAGCAACAAGAAGACGGTCGGCAACAAACTCAAT 64149 Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAG 868872 ||| ||||||||||| ||||||||| ||||| || Sbjct 64150 GTATTGGCACATGAGCTTGGCGTTCATACCGATAAG 64185 >seq911 Length=130151 Score = 89.7 bits (98), Expect = 6e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 || || || || || ||||||||||||||| | ||||||||||| ||||||| || || Sbjct 26934 CCCCGACCTTCCCATGCCGACTACACCTACCTTGCCAAGTACGGTGTCAAGGCCTCTTCT 26993 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 ||||| || || |||| || || ||||| || || || || || |||||| | || Sbjct 26994 GGCGGTGGTCGTGCGTCCGCGCGTGAGACTATCGGACGAGTTGCGGCTGGCGCGATTGCG 27053 Query 18478 GAGAAAT 18484 ||||||| Sbjct 27054 GAGAAAT 27060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107042117480011