Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq774 100 2e-16 >seq774 Length=91181 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || || | ||| |||||| || || || || || || || | || | || Sbjct 78744 CAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCGTC 78685 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||||||||||||||| |||| ||| |||||||| | || | ||||||||||| Sbjct 78684 TTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTC 78625 Query 34885 GTTTATTTTTTGTTTGAC-----GGATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939 | || || ||||| |||| ||||| | || ||||| |||| ||| Sbjct 78624 TTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGAT-----TCGACTTCAAGGGTA 78570 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || |||||||| || || ||||| ||||| Sbjct 78569 ATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 78532 Score = 95.1 bits (104), Expect = 8e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880 |||| ||||||||||||||||||||||||| |||||| ||||| | || | ||||||| Sbjct 78916 CATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCT 78857 Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 |||| | || || ||||| | || | ||| || || || |||| || | Sbjct 78856 TGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTGA 78797 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||||||| || || ||||| || || |||||||| Sbjct 78796 TAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78760 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||| || ||||| ||||| || || | || |||| Sbjct 79250 AGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 79191 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || || || |||| ||||||||| || | || | || |||||||| Sbjct 79190 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 79131 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| | |||||| || | || || ||| Sbjct 79130 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTC 79071 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| |||||||||||||| Sbjct 79070 TTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 79039 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || || | ||| |||||| ||||| || || || || || | || |||| Sbjct 79532 CAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATC 79473 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| |||||||||||||| ||||||||||| || | || | ||||||||||| Sbjct 79472 TTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTC 79413 Query 34885 GTTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939 | || || |||||| |||| ||||| | || ||||| |||| || Sbjct 79412 TTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGAT-----TCGACTTCAAGAGTG 79358 Query 34940 ATGGTCTTTCCCGTGAG 34956 || ||||| ||||| || Sbjct 79357 ATTGTCTTACCCGTAAG 79341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325688104222277