Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq739 93.3 3e-13
seq689 87.8 1e-11
>seq739
Length=59884
Score = 93.3 bits (102), Expect = 3e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192
||||| | ||||| | |||| |||||| |||||| | ||| |||| ||| | || |||
Sbjct 35327 GAATTCTGGTTCCACGCTATGGGTGGTCGAGAAGGTTTGATTGATACCGCTGTCAAGACT 35386
Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252
||||| ||||||||||| ||||||| | | ||||| | | || || | || |
Sbjct 35387 GCTGAGACTGGTTATATCCAAAGAAGATTGGTCAAAGCGATGGAGGACTTGAAGGTTGCT 35446
Query 435253 TATGATGGTACAGTGAGAAAT 435273
||||||||||| |||||||||
Sbjct 35447 TATGATGGTACTGTGAGAAAT 35467
>seq689
Length=10867
Score = 87.8 bits (96), Expect = 1e-11
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 282611 ATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG--TCATTAAAATCTC 282668
|| || || || ||||||| ||||| || | ||||| || || || ||||| | |
Sbjct 10621 ATTACCTTGAAAGGCCAATGCTTCATGTCGGCCTGAAC--TTCGGCATCGTTAAATTTAC 10564
Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728
|| || || || || ||||| |||| ||| ||| ||||| | |||| |||| | |
Sbjct 10563 GGCCGATCAACCGCTTAGCATCGAAAACAGTGTTGTAAGGATTCATTGCAACTTGGTTCT 10504
Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788
| || ||||| || || || |||| | || | || | |||||||||||| ||||| |
Sbjct 10503 TCGCGGCATCACCGATAAGTCGTTCAGAGTCATTGAAAGCAACATATGATGGTGTTGTTC 10444
Query 282789 GATTACCTTGATCATTCGC 282807
|||| || ||||| || ||
Sbjct 10443 GATTGCCCTGATCGTTGGC 10425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740572319699358
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |