Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq239 168 7e-37
seq664 152 6e-32
>seq239
Length=110902
Score = 168 bits (186), Expect = 7e-37
Identities = 449/679 (66%), Gaps = 8/679 (1%)
Strand=Plus/Minus
Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353
|| |||||||| ||||| | || || ||||| |||||||| ||||| ||||||
Sbjct 14982 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 14923
Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413
|||||||| || || || |||||||| || |||||| ||||| || |||||||||
Sbjct 14922 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 14863
Query 53414 TCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGG 53472
| |||||||| ||| | ||| | | | || |||||||||| ||| | || ||
Sbjct 14862 GCCGGTGGTATTGGTCTTCACATTCAC-AATATCCGTGCGAAGGGCTCCTACATTGCCGG 14804
Query 53473 GACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532
|| || || | || | || ||| | ||||||||||| | | | || ||| || ||
Sbjct 14803 TACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCG 14744
Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592
||||| | || |||||| ||||| || | ||||||||||| || ||||| ||
Sbjct 14743 ATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTG 14684
Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652
|||||| || | | || || | || | | ||| || ||| | || ||| | ||
Sbjct 14683 GCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACG 14624
Query 53653 CTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711
||||| || || ||| || || ||||| | || || |||||| || ||| ||
Sbjct 14623 AGCTCGTGATCTTTTCTAC-GCCCTCTGGATCTCCGATCTTTTCATG--AAGCGTGTCGA 14567
Query 53712 A--GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTA 53769
| || | ||| ||| || ||||| || ||||||||| || || | || ||
Sbjct 14566 ATCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTA 14507
Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAA 53829
|||||| || ||| | || | ||| || |||| |||||| | ||| |
Sbjct 14506 CGGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAAC 14447
Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889
|||| || | || | ||| || |||||| || || ||||| || ||
Sbjct 14446 TATCAAAGCCCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCC 14387
Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCAT 53949
||||| |||||||||||| | | |||| ||| |||||| ||| || | || |||
Sbjct 14386 TTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCAT 14327
Query 53950 CAAATCGAGCAACTTATGT 53968
|||||| || ||| | |||
Sbjct 14326 CAAATCCAGTAACCTCTGT 14308
>seq664
Length=11647
Score = 152 bits (168), Expect = 6e-32
Identities = 291/426 (68%), Gaps = 2/426 (0%)
Strand=Plus/Minus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
||||| |||||||| ||||||||||| |||| | ||| || ||| || | | | |
Sbjct 8166 CCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATAA 8107
Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271
|| || || | ||| ||| || || | ||| ||||||| | | | || ||
Sbjct 8106 TCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGGG 8047
Query 117272 TCGAATATGTTCTTG-GTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGC 117330
| ||| || | || | ||| | ||| ||| ||||| || ||||| | || ||
Sbjct 8046 TGGAAGAT-TGCTCGAGTCATCCGTGGAAGGTTTGTGAAGATATAACGGGCAGAAGCTGC 7988
Query 117331 ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390
|| || ||||| |||||||| ||||| ||||| || | || |||| || || | |||
Sbjct 7987 GTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGTT 7928
Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450
||| ||| || |||||||| || ||| |||||| || | || || |||||
Sbjct 7927 GTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCACC 7868
Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510
||||||||| || || | ||||| |||||||| || |||||||| ||||| || |||
Sbjct 7867 ATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTCTTT 7808
Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570
|| ||||| ||||| || || | | ||||| ||||||| || || ||||| ||
Sbjct 7807 GGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCGTC 7748
Query 117571 CGCCAC 117576
|||||
Sbjct 7747 GGCCAC 7742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547207908043400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |