Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq239 168 7e-37 seq664 152 6e-32 >seq239 Length=110902 Score = 168 bits (186), Expect = 7e-37 Identities = 449/679 (66%), Gaps = 8/679 (1%) Strand=Plus/Minus Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 || |||||||| ||||| | || || ||||| |||||||| ||||| |||||| Sbjct 14982 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 14923 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 |||||||| || || || |||||||| || |||||| ||||| || ||||||||| Sbjct 14922 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 14863 Query 53414 TCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGG 53472 | |||||||| ||| | ||| | | | || |||||||||| ||| | || || Sbjct 14862 GCCGGTGGTATTGGTCTTCACATTCAC-AATATCCGTGCGAAGGGCTCCTACATTGCCGG 14804 Query 53473 GACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532 || || || | || | || ||| | ||||||||||| | | | || ||| || || Sbjct 14803 TACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCG 14744 Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592 ||||| | || |||||| ||||| || | ||||||||||| || ||||| || Sbjct 14743 ATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTG 14684 Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652 |||||| || | | || || | || | | ||| || ||| | || ||| | || Sbjct 14683 GCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACG 14624 Query 53653 CTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711 ||||| || || ||| || || ||||| | || || |||||| || ||| || Sbjct 14623 AGCTCGTGATCTTTTCTAC-GCCCTCTGGATCTCCGATCTTTTCATG--AAGCGTGTCGA 14567 Query 53712 A--GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTA 53769 | || | ||| ||| || ||||| || ||||||||| || || | || || Sbjct 14566 ATCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTA 14507 Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAA 53829 |||||| || ||| | || | ||| || |||| |||||| | ||| | Sbjct 14506 CGGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAAC 14447 Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889 |||| || | || | ||| || |||||| || || ||||| || || Sbjct 14446 TATCAAAGCCCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCC 14387 Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCAT 53949 ||||| |||||||||||| | | |||| ||| |||||| ||| || | || ||| Sbjct 14386 TTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCAT 14327 Query 53950 CAAATCGAGCAACTTATGT 53968 |||||| || ||| | ||| Sbjct 14326 CAAATCCAGTAACCTCTGT 14308 >seq664 Length=11647 Score = 152 bits (168), Expect = 6e-32 Identities = 291/426 (68%), Gaps = 2/426 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| |||||||| ||||||||||| |||| | ||| || ||| || | | | | Sbjct 8166 CCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATAA 8107 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || || || | ||| ||| || || | ||| ||||||| | | | || || Sbjct 8106 TCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGGG 8047 Query 117272 TCGAATATGTTCTTG-GTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGC 117330 | ||| || | || | ||| | ||| ||| ||||| || ||||| | || || Sbjct 8046 TGGAAGAT-TGCTCGAGTCATCCGTGGAAGGTTTGTGAAGATATAACGGGCAGAAGCTGC 7988 Query 117331 ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 || || ||||| |||||||| ||||| ||||| || | || |||| || || | ||| Sbjct 7987 GTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGTT 7928 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 ||| ||| || |||||||| || ||| |||||| || | || || ||||| Sbjct 7927 GTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCACC 7868 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510 ||||||||| || || | ||||| |||||||| || |||||||| ||||| || ||| Sbjct 7867 ATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTCTTT 7808 Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 || ||||| ||||| || || | | ||||| ||||||| || || ||||| || Sbjct 7807 GGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCGTC 7748 Query 117571 CGCCAC 117576 ||||| Sbjct 7747 GGCCAC 7742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207908043400