Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq940 84.2 2e-11
>seq940
Length=44898
Score = 84.2 bits (92), Expect = 2e-11
Identities = 231/351 (66%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280
|||| || |||||||| ||||| || | | ||||| | | ||||| ||||||
Sbjct 36751 TTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAGCTTTTGTGGT 36810
Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340
|||| || || || |||||| |||||| | ||| || ||||||||| |
Sbjct 36811 TCGTTTCTGGTTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGGATCTGGGATG 36870
Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATCTCGGGAGG-AGGGCG 34397
| |||| ||| || ||||| ||| ||| || ||| | | ||| | || |
Sbjct 36871 GTAACGGAAGCAAAGAATTCCTGGAGAAGGTCGGGCTCGGCCA---CAGAAGGGAAGGTG 36927
Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457
| |||| || || |||||||||||||||||||| ||||| || ||||| | ||
Sbjct 36928 ATCTGGGACCTGTGTACGGGTTCCAGTGGAGACATTTTGGTGCCGAGTACACTGATGCCG 36987
Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC 34517
| | |||||| || | |||| ||||| ||||| || ||||||||| | |||
Sbjct 36988 ACGGCGACTATAAGGACAAAGGAGTCGACCAACTGCAAAGGGTAATCGACACCATCAAGA 37047
Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATC 34568
|| || |||||| |||| | | | || |||||||| |||| ||
Sbjct 37048 ACAATCCAACTGACAGGCGGATTATCTTATCGGCTTGGAACCCAAAGGGTC 37098
Score = 84.2 bits (92), Expect = 2e-11
Identities = 231/351 (66%), Gaps = 6/351 (2%)
Strand=Plus/Minus
Query 6777 GATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGG 6836
|| |||| |||||||| || | | | |||| |||||| || || ||| | ||
Sbjct 37098 GACCCTTTGGGTTCCAAGCCGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGG 37039
Query 6837 TGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCC 6896
||||||| || ||||| ||||| |||| | || |||||| | ||| |
Sbjct 37038 TGTCGATTACCCTTTGCAGTTGGTCGACTCCTTTGTCCTTATAGTCGCCGTCGGCATCAG 36979
Query 6897 GATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCT-CC 6955
||||| || ||||| |||||||||||||||||||| || || |||| || || | ||
Sbjct 36978 TGTACTCGGCACCAAAATGTCTCCACTGGAACCCGTACACAGGTCCCAGATCACCTTCCC 36919
Query 6956 TCCCGAGATGG--GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGA 7013
| | | ||| || ||| ||| ||||| || ||| |||| | | |||||||
Sbjct 36918 TTCTG---TGGCCGAGCCCGACCTTCTCCAGGAATTCTTTGCTTCCGTTACCATCCCAGA 36862
Query 7014 TCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073
|| || ||| | |||||| |||||| || || || |||||||||| |
Sbjct 36861 TCCCTACGCCCTGACTAGAGAGCACCTTGGCGTCGGTACAACCAGAAACGAACCACAAAA 36802
Query 7074 GCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124
|||| | | ||||| | | || ||||| |||||||| || ||||
Sbjct 36801 GCTCGGCAATGACGCCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 36751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448255771319760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |