Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq940 84.2 2e-11 >seq940 Length=44898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 231/351 (66%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| || |||||||| ||||| || | | ||||| | | ||||| |||||| Sbjct 36751 TTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAGCTTTTGTGGT 36810 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340 |||| || || || |||||| |||||| | ||| || ||||||||| | Sbjct 36811 TCGTTTCTGGTTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGGATCTGGGATG 36870 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATCTCGGGAGG-AGGGCG 34397 | |||| ||| || ||||| ||| ||| || ||| | | ||| | || | Sbjct 36871 GTAACGGAAGCAAAGAATTCCTGGAGAAGGTCGGGCTCGGCCA---CAGAAGGGAAGGTG 36927 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457 | |||| || || |||||||||||||||||||| ||||| || ||||| | || Sbjct 36928 ATCTGGGACCTGTGTACGGGTTCCAGTGGAGACATTTTGGTGCCGAGTACACTGATGCCG 36987 Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC 34517 | | |||||| || | |||| ||||| ||||| || ||||||||| | ||| Sbjct 36988 ACGGCGACTATAAGGACAAAGGAGTCGACCAACTGCAAAGGGTAATCGACACCATCAAGA 37047 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATC 34568 || || |||||| |||| | | | || |||||||| |||| || Sbjct 37048 ACAATCCAACTGACAGGCGGATTATCTTATCGGCTTGGAACCCAAAGGGTC 37098 Score = 84.2 bits (92), Expect = 2e-11 Identities = 231/351 (66%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 6777 GATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGG 6836 || |||| |||||||| || | | | |||| |||||| || || ||| | || Sbjct 37098 GACCCTTTGGGTTCCAAGCCGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGG 37039 Query 6837 TGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCC 6896 ||||||| || ||||| ||||| |||| | || |||||| | ||| | Sbjct 37038 TGTCGATTACCCTTTGCAGTTGGTCGACTCCTTTGTCCTTATAGTCGCCGTCGGCATCAG 36979 Query 6897 GATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCT-CC 6955 ||||| || ||||| |||||||||||||||||||| || || |||| || || | || Sbjct 36978 TGTACTCGGCACCAAAATGTCTCCACTGGAACCCGTACACAGGTCCCAGATCACCTTCCC 36919 Query 6956 TCCCGAGATGG--GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGA 7013 | | | ||| || ||| ||| ||||| || ||| |||| | | ||||||| Sbjct 36918 TTCTG---TGGCCGAGCCCGACCTTCTCCAGGAATTCTTTGCTTCCGTTACCATCCCAGA 36862 Query 7014 TCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073 || || ||| | |||||| |||||| || || || |||||||||| | Sbjct 36861 TCCCTACGCCCTGACTAGAGAGCACCTTGGCGTCGGTACAACCAGAAACGAACCACAAAA 36802 Query 7074 GCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124 |||| | | ||||| | | || ||||| |||||||| || |||| Sbjct 36801 GCTCGGCAATGACGCCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 36751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448255771319760