Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq774 100 2e-16 >seq774 Length=91181 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || || | ||| || ||| ||| ||||| ||||| ||||||| ||| ||||| || Sbjct 78746 CGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCG 78687 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || ||||| || || || || || || | ||||||||||| | || | | ||| ||| Sbjct 78686 TCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTG 78627 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||| || |||| | | | ||||||||||| || || || | || || Sbjct 78626 TCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGGGTAATG 78567 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || || ||||| || ||||||||||| Sbjct 78566 GTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 78532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || || | ||| || ||| ||| ||||| ||||| ||||||| ||| ||||| | Sbjct 79534 CGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCA 79475 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || ||||| ||||| || || || || || || ||||| || | ||| | | ||| ||| Sbjct 79474 TCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTG 79415 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || ||| || |||| ||| | | | ||||||||||| || || || | ||||| Sbjct 79414 TCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTATCGCTCGATTCGACTTCAAGAGTGAT 79356 Query 39249 ACTTTTTCCCGTCAG 39263 | || ||||| || Sbjct 79355 TGTCTTACCCGTAAG 79341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429539406892079