Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
15.1_202017-04-19] 1,183 sequences; 18,442,244 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq774 154 4e-32
seq872 132 1e-25
>seq774
Length=91181
Score = 154 bits (170), Expect = 4e-32
Identities = 168/222 (76%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980
||||| ||||| ||||| ||||| || ||||| || ||||| || || ||| |||
Sbjct 78535 CAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC--- 78591
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|| |||||||| || ||||| ||||| || ||||| || || |||||||| ||||||
Sbjct 78592 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 78651
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| ||| | || ||||||||||| || || ||||| || | |||||| ||||||| ||
Sbjct 78652 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 78711
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||||| || || || || ||||| || ||| | ||| ||
Sbjct 78712 ATCCAAAAGGAGTCCACTCTCCATCTCGTCTTGCGTCTCCGA 78753
Score = 150 bits (166), Expect = 4e-31
Identities = 137/173 (79%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || |||||||| || || || ||||| || || ||||| || |||
Sbjct 78256 CAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCCGAC 78315
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || |||||||| |||||||||
Sbjct 78316 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAA 78375
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| | ||||| || || || ||||| |||||||| |||||||| |||| ||
Sbjct 78376 CGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACTA 78428
Score = 143 bits (158), Expect = 6e-29
Identities = 156/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||| | || ||||| || ||||| ||||| || || || |||
Sbjct 79042 CAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCTGAC 79101
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || |||||||||||||| ||||| || ||||| || ||||||
Sbjct 79102 ACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAGCAA 79161
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || || || || ||||| || || ||||| | |||||| |||| || ||| ||
Sbjct 79162 CGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAACATC 79221
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| ||||| || || || ||||||
Sbjct 79222 CAAAAGGAATCTACCCTTCACCTTGTT 79248
Score = 141 bits (156), Expect = 2e-28
Identities = 135/173 (78%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||||| || ||||| || ||||| || ||||| ||| ||| |||
Sbjct 78763 CAGATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCTGAC 78822
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| |||||||||||||| || || |||||||| ||||| |||
Sbjct 78823 ACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAACAA 78882
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| | |||||||||||||| || || || ||||| | ||| | | |||||
Sbjct 78883 CGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAACTTTGTCTGATTA 78935
Score = 141 bits (156), Expect = 2e-28
Identities = 155/205 (76%), Gaps = 6/205 (3%)
Strand=Plus/Plus
Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGT 177997
||| || || || || ||||| || || || ||| ||| || |||||||| |||||
Sbjct 79340 TCTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGC---GATACCATCGACAACGT 79396
Query 177998 CAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGC 178057
||| ||||| || ||||| || || ||||| || || ||||||||||| ||||||||
Sbjct 79397 CAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGC 79456
Query 178058 CGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117
||||||||| || |||||||| | |||||| ||||||| || | ||||| || || ||
Sbjct 79457 CGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCAC 79516
Query 178118 ACTGCATCTTGTTTTGAGACTCAGA 178142
|| ||||| || ||| | ||| ||
Sbjct 79517 TCTCCATCTCGTCTTGCGTCTCCGA 79541
>seq872
Length=80307
Score = 132 bits (146), Expect = 1e-25
Identities = 123/156 (79%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000
||| || ||||| || |||||||||||||| || ||| ||||||||||| || |||||
Sbjct 65561 TCTTACCGGAAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAA 65502
Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060
||||| |||||||| || || ||||| || ||||| || ||| | |||||||||||
Sbjct 65501 GTCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAACAGCGATTGATCTTCGCCGG 65442
Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| |||||||| || || ||||| ||| | || ||
Sbjct 65441 AAAGCAGCTCGAGGACGGCAGGACCCTTTCTGACTA 65406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203712954820502
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |