Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
25.1_202017-04-19] 1,063 sequences; 18,448,816 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq517 149 8e-31
seq329 114 2e-20
>seq517
Length=208906
Score = 149 bits (164), Expect = 8e-31
Identities = 185/253 (73%), Gaps = 3/253 (1%)
Strand=Plus/Minus
Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362
||| || || ||| ||| ||||||||||||| | || || ||||| || || || ||
Sbjct 145202 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 145143
Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422
|| ||||| || || ||||| |||||||| || ||||| ||||| || ||||| |||||
Sbjct 145142 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 145083
Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33479
||| || || || |||||||| ||||| |||| ||| || ||| | | ||||
Sbjct 145082 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 145023
Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539
||||| ||||||| |||||||||||| | |||||| || || || || || |
Sbjct 145022 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 144963
Query 33540 AAAGAGATAGTTT 33552
|||||| |||||
Sbjct 144962 AAAGAGGAAGTTT 144950
>seq329
Length=110880
Score = 114 bits (126), Expect = 2e-20
Identities = 595/951 (63%), Gaps = 65/951 (7%)
Strand=Plus/Plus
Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196
||| || || || || |||| | | | | |||||| || || | |||||||| | |
Sbjct 14469 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 14528
Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63255
||| || || || | || || ||||| || ||||| | ||||| || || || ||
Sbjct 14529 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 14588
Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63314
| ||||| | | || ||||| || || ||||| ||||| || | ||| |
Sbjct 14589 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 14646
Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374
| | ||||| ||||| || || | || ||||| | | ||||| || ||||| ||
Sbjct 14647 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 14706
Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434
|| ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || |||||
Sbjct 14707 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 14766
Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAG 63493
|| |||||||||||||| || ||| || | ||||| ||||| ||| ||| ||
Sbjct 14767 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 14825
Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553
||| || || || || | || ||||| || || || | || || ||||||||
Sbjct 14826 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 14885
Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613
|| ||| ||||| ||||| | || || || ||||||||| | || |||
Sbjct 14886 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 14945
Query 63614 TCCCGCATTAAA------------------------------------------------ 63625
|| || || ||
Sbjct 14946 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 15005
Query 63626 -TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63684
|| ||||| ||||| || || || | | ||||| | ||||| || ||||| ||
Sbjct 15006 TTACAGTAGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 15065
Query 63685 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63744
|| ||| || | | ||| || || || ||||| ||||| | |||||||||||| |
Sbjct 15066 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 15125
Query 63745 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63804
|| || |||||| || || | | | ||| ||| | || | ||| || ||||| |
Sbjct 15126 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 15185
Query 63805 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATT 63864
| |||||||| | |||||||| || || |||||| | |||| ||| ||||||| |
Sbjct 15186 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT---GT 15242
Query 63865 TGTTAACTATATCCATGGTGA-TACTTGA--AATAATCGGAGAATGTTTCCCATTTTTAG 63921
||| | | | || || || | | | ||| || |||||||| || || | || |
Sbjct 15243 TGTCCATGACAACCTTGTAGACGTCATCATCAATCATGGGAGAATGCTTGCCGGTCTTGG 15302
Query 63922 GATTAACATAGTTGAATAAA--TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTT 63979
| || || | || || || || | | || || || | || || || |||||
Sbjct 15303 GGTTGACCCA--TGCATGAAGGTCATGTACGACGGCAGAGAAGACCTTCTTGGTCTCCTT 15360
Query 63980 GTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030
|| || || || | || |||| ||| || || || ||||||||||||||
Sbjct 15361 ATGAAGGTTGGAAATAGCGATTCGGGCAGCAAGGATAGCATAATCCGGATG 15411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622938922589080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |