Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
25.1_202017-04-19] 1,063 sequences; 18,448,816 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq329 235 1e-56
>seq329
Length=110880
Score = 235 bits (260), Expect = 1e-56
Identities = 641/978 (66%), Gaps = 14/978 (1%)
Strand=Plus/Minus
Query 363592 CCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTT 363651
|| || ||||| || ||||| || | |||||||| || ||||| || |||||||
Sbjct 14936 CCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTAC 14877
Query 363652 GACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATC 363711
|| || || |||| ||||||| || ||||||| ||| || || |||||| | ||
Sbjct 14876 GATACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATT 14817
Query 363712 CACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTG 363771
|||||| | ||||| || | |||||| ||| || || ||||| || || |
Sbjct 14816 CACAATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGCATC 14757
Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831
|||| ||||| || | | ||| || || | ||||| || || ||||| |||
Sbjct 14756 ATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGATCAAGGTGGTAACAAG 14697
Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891
|| || || || || || ||||| |||||| || || ||| | ||||| || ||
Sbjct 14696 CGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATT 14637
Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951
|| | |||| ||| || || ||||| | || || |||||||| ||||| || ||
Sbjct 14636 GACTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGATCTTTTCTACGCCCTC 14577
Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTG- 364010
||| | || || | ||| |||||||| || || | | | | ||||| |||||| ||
Sbjct 14576 TGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGG--ACTCTTATGT 14519
Query 364011 --CCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATAC 364068
||| | ||| || || || ||| |||| || | ||||| || | || || ||
Sbjct 14518 GTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACGGTGAAGAATTTGAAAAGCTTTAT 14460
Query 364069 GAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTT 364128
|| | || || | |||| |||| | || || || || |||||||| |||||
Sbjct 14459 GAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTATCAAAGCCCAGAAGCTTTGGTTC 14400
Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188
|||||| | || | || | ||||| || || || || | ||||| ||| | |
Sbjct 14399 GCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTTACATCTGCTACAAGGATGCTGCC 14340
Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAG 364248
||| |||||||||||| ||||||||||||| || | || ||||| ||||| ||
Sbjct 14339 AACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCAAATCCAGTAACCTCTGTACTGAA 14280
Query 364249 ATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308
|| || || || | |||| || || ||| || ||||| ||||| || | || |||
Sbjct 14279 ATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCTGTAATCTTGCTTCTCTTGCTCTT 14220
Query 364309 CCGGCGTTTGTAAAAGATGGTAC-------TTTTGACCACCAGCATCTTTATGACGTAAC 364361
|| || || || | | ||| || | |||| | | | || | || | ||
Sbjct 14219 CCTGCCTTCGT-AGACCTGGAACGTCGCGTCTATGACTTCAAAAAGCTGCACGAGATTAC 14161
Query 364362 CTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGA 364421
| | || ||| || || |||| || ||| | || || |||||| | |||||
Sbjct 14160 CAAGGTTGTTACAAAGAACCTTGACACTGTAATCACCCGTAACTACTATCCAGTGCCTGA 14101
Query 364422 AGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA 364481
||| || || ||||| ||||| || ||||||||||||| ||||| || || ||
Sbjct 14100 GGCCCGCAACTCCAACATGCGCCATCGGCCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGA 14041
Query 364482 CGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGA 364541
|| ||| ||| || ||| | || || || |||| ||| | | || |||| |
Sbjct 14040 CGCTTTCATGGCCCTTCGCATGCCGTTCGACTCCGCTGAGGCTAGGGAACTCAATATCCA 13981
Query 364542 GATCTTTGAAACAATGTA 364559
|||||| || || || ||
Sbjct 13980 GATCTTCGAGACGATATA 13963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303335848731266
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |