Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
25.1_202017-04-19] 1,063 sequences; 18,448,816 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq517 140 3e-28
>seq517
Length=208906
Score = 140 bits (154), Expect = 3e-28
Identities = 155/204 (76%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||||||||||| || | ||||| ||||||| |||||||||
Sbjct 130510 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCT 130451
Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| | | | || || | ||| ||||| ||||| ||||| ||||| ||
Sbjct 130450 GACACTATCGACAACGTTAAGGCGAAGATTCA-GGACAAGGAAGGTATTCCTCCTGATCA 130392
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | |||||||| || |||||| | || |||| ||| ||| | ||| |||||
Sbjct 130391 GCAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAA 130332
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
|| ||||| ||||| || || ||
Sbjct 130331 CATCCAAAAGGAATCTACCCTTCA 130308
Score = 100 bits (110), Expect = 2e-16
Identities = 147/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || | ||||| ||| |||| || | ||||| || |||
Sbjct 131017 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 130958
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || ||||| || || ||| || ||| ||||| || || || || |||||||
Sbjct 130957 GATACCATCGA--CAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACC 130900
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | ||||| ||||| || ||| | ||||| | || ||| | ||||||||
Sbjct 130899 AGCAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACA 130840
Query 25177 ATATTCAAAAAGAATCCACGCTACAT 25202
|||| ||||| || ||||| || |||
Sbjct 130839 ATATCCAAAAGGAGTCCACTCTCCAT 130814
Score = 89.7 bits (98), Expect = 4e-13
Identities = 118/162 (73%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| |||||||| || || |||||| | |||||||| | ||||| | |||||||||||
Sbjct 131299 ACCATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCT 131240
Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|| ||||| ||||| || || ||| || ||| ||||| || || || || ||||
Sbjct 131239 TCCGACACCATCGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTG 131182
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155
|||| || || | || ||||| || || || | |||||||
Sbjct 131181 ACCAGCAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATG 131140
Score = 82.4 bits (90), Expect = 7e-11
Identities = 126/180 (70%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082
|| ||||| | ||||| | ||||| || ||| || || ||||| | |||
Sbjct 130205 ACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAACGTCAAGGCC 130146
Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142
|| ||| ||||| || || || || ||||| || || || | || || ||||| |||
Sbjct 130145 AAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGAAAA 130086
Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202
||| | ||||||| || ||| | |||||||||||||||||| || ||||| || |||
Sbjct 130085 CAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCACTCTCCAT 130026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433322386100345
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |