Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
25.1_202017-04-19] 1,063 sequences; 18,448,816 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq636 138 2e-27
seq429 111 3e-19
seq670 98.7 2e-15
>seq636
Length=12038
Score = 138 bits (152), Expect = 2e-27
Identities = 240/349 (69%), Gaps = 0/349 (0%)
Strand=Plus/Minus
Query 218507 TCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGC 218566
||||| || | || || || |||||||||| ||||| ||||| | |||| |
Sbjct 3994 TCCCCATCTCCGATTTTGTCAACAAGGAGCTGATTCTCTTCTCCATGGCTGATAATATCC 3935
Query 218567 GTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCG 218626
| || ||||| |||| || || ||||| || ||||| ||| | |||||||
Sbjct 3934 GATCGATTCCATCTGTGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTT 3875
Query 218627 CATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCG 218686
|||||||| ||||| ||||||| |||||||||||| || | || || || || |
Sbjct 3874 GTTTCAAGCGAAACCTCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGG 3815
Query 218687 AAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCAC 218746
| | | | || || || ||||| ||| || ||||||| ||| | ||||
Sbjct 3814 AGAAAACCGCATATCACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGCTTAGCAC 3755
Query 218747 AGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTC 218806
| ||| || |||||||||||||| || ||||| |||||||| || |||||| |||
Sbjct 3754 AAAACTTCGTCGGCAGTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTC 3695
Query 218807 GTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAA 218855
|||| ||||| || || ||||||||| | |||||||| |||||
Sbjct 3694 GTCTTGCAGGTGGTAAAGACGCAGCTTCTGCCCGTTATATCTTCACAAA 3646
>seq429
Length=87316
Score = 111 bits (122), Expect = 3e-19
Identities = 122/160 (76%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236
|||| ||||| ||| | ||||| |||||||| | || |||| ||||| ||||| ||
Sbjct 33608 TTGGTCCCAACGGTTCCGGTAAATCTACCCTTGTTAAGCTCCTCACTGGTGAGACTGAGC 33667
Query 280237 CCA--CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293
||| ||| | |||| | | |||||||| || ||| || || | ||||||||| || |
Sbjct 33668 CCAACCTGGGCGGTCAGGTCTGGAAGCACCCTAACTTGGTCATTGGTTACGTCGCCCAAC 33727
Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333
|||||||||||||||| || |||||||| ||| |||||
Sbjct 33728 ACGCTTTCCACCACATTGACAACCACCTTGACTCTACTCC 33767
Score = 100 bits (110), Expect = 6e-16
Identities = 137/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
|||||||| || || ||||||||||||||||| || || | || || ||||| |
Sbjct 33127 GGTTCTCTTTCTGGCGGTTGGAAGATGAAGCTTGCTCTTGCCCGAGCTATTCTCTTCAAG 33186
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
|||||| |||| |||| || ||||| ||||||||| |||| ||||| | ||||
Sbjct 33187 GCCGATATCCTCTTGCTCGACGAGCCTACCAACCACTTGGATGTTCTTAACGTTGACTGG 33246
Query 279819 CTAGTGTCCTACCTAACCAGTCTGA-AGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877
|| | ||| || ||| || | ||| | | ||| |||||||||||||||||||
Sbjct 33247 CTGATCAACTATCTCACCTCCCTTACTCGATG-TACCTCCATCATTGTCTCTCACGACTC 33305
Query 279878 TGGCTTCCT 279886
|| ||||||
Sbjct 33306 TGACTTCCT 33314
Score = 86.0 bits (94), Expect = 1e-11
Identities = 84/106 (79%), Gaps = 2/106 (2%)
Strand=Plus/Plus
Query 280719 GGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGC-AACACCC 280777
|||||||| || || |||||||| || | ||| |||| || ||| |||| || ||||
Sbjct 34221 GGTCTTTCCGGTGGTCAGAAGGTTAAGGTCGTCCTCGGTGCCGCTACCTGGCGAAGACCC 34280
Query 280778 TCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823
||| | ||| |||||||||||||||||||||||| ||||| |||
Sbjct 34281 -CACATCATCTGTCTCGACGAGCCTACCAACTATCTCGACCGAGAG 34325
>seq670
Length=185670
Score = 98.7 bits (108), Expect = 2e-15
Identities = 137/191 (72%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229
||| || | |||||||| ||||| ||||| |||||||| ||||| |||| || || |||
Sbjct 20999 GGTATCGTCGGACCCAACGGTGCCGGTAAATCTACCCTCATCAAGCTCCTCACCGGTGAG 20940
Query 280230 ACCCAGGCCACT---GAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286
|| | | || || || || || ||||| ||| | || | | ||| |||
Sbjct 20939 ACT---GTCCCTCAAGAAGGTTCAGTGCACAAGCACCCCGCTCTTCGTGTAGGTTATGTC 20883
Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346
|||||||| || |||||||| ||| | | ||| |||||| |||| || || ||||||
Sbjct 20882 GCTCAGCATGCGTTCCACCATATCAACCAGCACTTGGACAAGACTGCTGTGCAGTACATT 20823
Query 280347 CAGTGGCGCTA 280357
|||||||| ||
Sbjct 20822 CAGTGGCGATA 20812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027822801183983
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |