Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
25.1_202017-04-19] 1,063 sequences; 18,448,816 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq329 167 3e-36
seq517 122 1e-22
seq636 105 8e-18
>seq329
Length=110880
Score = 167 bits (184), Expect = 3e-36
Identities = 713/1116 (64%), Gaps = 27/1116 (2%)
Strand=Plus/Plus
Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162
|||||| || |||| |||||||| | ||| || || || || | | || || |
Sbjct 13857 CCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGGT 13916
Query 114163 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 114222
|| |||| || | |||| | |||||| || || ||||| || || ||||| ||
Sbjct 13917 ACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAA 13976
Query 114223 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 114282
|| | ||| | | || | ||||| |||| || |||| | || || ||
Sbjct 13977 GATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAA 14036
Query 114283 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCG 114342
| || || ||||| |||||||| || |||| || ||||| | ||| || || || ||
Sbjct 14037 AGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGAGTTGCG 14096
Query 114343 AGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 114399
|| ||| ||| ||||| | || | ||| || | | || || || || ||
Sbjct 14097 GGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 14153
Query 114400 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 114459
|||||| || || || || ||||||| | | ||| | |||| || | || |
Sbjct 14154 AACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTCTACGAA 14213
Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519
|||||| || | || || |||||||| |||| ||||| | || |||||
Sbjct 14214 GGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTC 14273
Query 114520 TATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 114577
|| ||||| ||||| | || || | | | ||||| || | || |||||| || |||
Sbjct 14274 CATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTTGGAC 14331
Query 114578 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 114637
|| | ||| ||||||||||| ||||| || || ||||| ||||| | || |
Sbjct 14332 TTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCG 14391
Query 114638 AGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGG-CGTTGGCTCGCCCCTCCTCCT 114695
|| || || ||| | | || | |||| | ||| | || || |||| |||| |
Sbjct 14392 AGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-T 14449
Query 114696 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 114755
|||| | || || |||||| |||||||| | || | || || || ||
Sbjct 14450 CGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACT 14509
Query 114756 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTG 114815
| || || | |||| ||| | ||| | || |||||||||||||| || || |
Sbjct 14510 CGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 14569
Query 114816 GGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 114875
||||||||| || |||| ||||| ||| || | || || | || || || |
Sbjct 14570 AGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 14629
Query 114876 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 114935
|| || | ||||| | | ||| |||||||| || || || || | |||| | |
Sbjct 14630 TTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCAC 14689
Query 114936 CCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAA 114989
| | |||| |||| | || | || || | |||||||| | | | || |
Sbjct 14690 C---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGA 14746
Query 114990 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGC 115047
|||| |||||||| || | || | ||||| || || || || ||| | || ||
Sbjct 14747 GCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--CTTCGC 14804
Query 115048 TCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTC 115107
| || || || ||||| | ||||||||| || || ||| ||||| || || ||
Sbjct 14805 ACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGT 14864
Query 115108 CGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCT 115167
| ||||| | ||||||| || || || |||||| |||| | || | ||||||||
Sbjct 14865 CTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGA 14924
Query 115168 CGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 115203
|||||||| || | || ||||| |||||||| ||
Sbjct 14925 TGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 14960
>seq517
Length=208906
Score = 122 bits (134), Expect = 1e-22
Identities = 121/154 (79%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105
|||||| || ||||||||||||||| || |||||||| || || |||||| || ||
Sbjct 145199 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 145140
Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAACCCGAGAAGAAGA 126164
||||||||||| |||||||| | |||||| || | | | ||| ||||| ||||||||||
Sbjct 145139 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGA 145081
Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198
| |||||||| || || |||| ||| |||||
Sbjct 145080 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTC 145047
>seq636
Length=12038
Score = 105 bits (116), Expect = 8e-18
Identities = 285/428 (67%), Gaps = 6/428 (1%)
Strand=Plus/Plus
Query 171727 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 171786
||| || || ||||| || | || || | | |||||||||| || ||||| | |
Sbjct 3495 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3554
Query 171787 GTCTGGTTCAAT-CGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845
||||||||||| |||| || ||| || |||| |||||||||| ||| || |
Sbjct 3555 ATCTGGTTCAATGCGCATACC-ATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 3613
Query 171846 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 171904
| | |||||| |||| ||||| ||| || ||||||||||| || | | ||
Sbjct 3614 GGTGGAAGATTGCTCGAGTCATCCGTGGA-AGGTTTGTGAAGATATAACGGGCAGAAGCT 3672
Query 171905 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATA 171964
|| ||||| ||||| ||||| || |||||||| || || || || ||||||||
Sbjct 3673 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 3732
Query 171965 TTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 172024
||||| || | | ||| | || || |||||| || | | | |||||
Sbjct 3733 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 3792
Query 172025 CCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAA-CTGTGCCACCTTCATCTC 172083
|| || || || || | || |||| || || |||| ||| ||| || ||||| || ||
Sbjct 3793 CCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 3851
Query 172084 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 172143
| ||||||| | ||| || || | | ||||||| ||| ||| ||||| ||
Sbjct 3852 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 3911
Query 172144 GTCGGCCA 172151
||||||||
Sbjct 3912 GTCGGCCA 3919
Score = 102 bits (112), Expect = 1e-16
Identities = 139/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 172777 AGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACC 172836
||| ||||| ||||| | || || | ||||||||| || || || | |||||| ||
Sbjct 4645 AGCTTCGCGAACATTGAGAAGTTTACCCCTGAGAGGGAAAACGCCATACTCATCACGTCC 4704
Query 172837 AACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 172896
|| || | |||||||| ||| ||||| | || || ||||| || ||||||| ||||||
Sbjct 4705 GACAACTGCAAGACCAGAAACGGCGAGAGCTTTGGCAGAATCTCCTTCCGTCAGGATGAG 4764
Query 172897 CGTACACTT--TCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 172954
|| || || | || || |||| || || ||||||||||| || | ||| ||||
Sbjct 4765 AGTGCAGTTCTTGGAGTTTCGGCCG--CCAGCATTGTTCGCATCTTCAAGCTTTACAATA 4822
Query 172955 CCAGTAATTTTG 172966
|||| |||| ||
Sbjct 4823 CCAGAAATTCTG 4834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597345662664040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |