Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 25.1_202017-04-19] 1,063 sequences; 18,448,816 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq329 167 3e-36 seq517 122 1e-22 seq636 105 8e-18 >seq329 Length=110880 Score = 167 bits (184), Expect = 3e-36 Identities = 713/1116 (64%), Gaps = 27/1116 (2%) Strand=Plus/Plus Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 |||||| || |||| |||||||| | ||| || || || || | | || || | Sbjct 13857 CCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGGT 13916 Query 114163 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 114222 || |||| || | |||| | |||||| || || ||||| || || ||||| || Sbjct 13917 ACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAA 13976 Query 114223 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 114282 || | ||| | | || | ||||| |||| || |||| | || || || Sbjct 13977 GATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAA 14036 Query 114283 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCG 114342 | || || ||||| |||||||| || |||| || ||||| | ||| || || || || Sbjct 14037 AGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGAGTTGCG 14096 Query 114343 AGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 114399 || ||| ||| ||||| | || | ||| || | | || || || || || Sbjct 14097 GGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 14153 Query 114400 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 114459 |||||| || || || || ||||||| | | ||| | |||| || | || | Sbjct 14154 AACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTCTACGAA 14213 Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519 |||||| || | || || |||||||| |||| ||||| | || ||||| Sbjct 14214 GGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTC 14273 Query 114520 TATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 114577 || ||||| ||||| | || || | | | ||||| || | || |||||| || ||| Sbjct 14274 CATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTTGGAC 14331 Query 114578 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 114637 || | ||| ||||||||||| ||||| || || ||||| ||||| | || | Sbjct 14332 TTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCG 14391 Query 114638 AGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGG-CGTTGGCTCGCCCCTCCTCCT 114695 || || || ||| | | || | |||| | ||| | || || |||| |||| | Sbjct 14392 AGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-T 14449 Query 114696 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 114755 |||| | || || |||||| |||||||| | || | || || || || Sbjct 14450 CGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACT 14509 Query 114756 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTG 114815 | || || | |||| ||| | ||| | || |||||||||||||| || || | Sbjct 14510 CGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 14569 Query 114816 GGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 114875 ||||||||| || |||| ||||| ||| || | || || | || || || | Sbjct 14570 AGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 14629 Query 114876 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 114935 || || | ||||| | | ||| |||||||| || || || || | |||| | | Sbjct 14630 TTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCAC 14689 Query 114936 CCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAA 114989 | | |||| |||| | || | || || | |||||||| | | | || | Sbjct 14690 C---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGA 14746 Query 114990 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGC 115047 |||| |||||||| || | || | ||||| || || || || ||| | || || Sbjct 14747 GCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--CTTCGC 14804 Query 115048 TCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTC 115107 | || || || ||||| | ||||||||| || || ||| ||||| || || || Sbjct 14805 ACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGT 14864 Query 115108 CGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCT 115167 | ||||| | ||||||| || || || |||||| |||| | || | |||||||| Sbjct 14865 CTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGA 14924 Query 115168 CGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 115203 |||||||| || | || ||||| |||||||| || Sbjct 14925 TGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 14960 >seq517 Length=208906 Score = 122 bits (134), Expect = 1e-22 Identities = 121/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||||||||||||||| || |||||||| || || |||||| || || Sbjct 145199 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 145140 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAACCCGAGAAGAAGA 126164 ||||||||||| |||||||| | |||||| || | | | ||| ||||| |||||||||| Sbjct 145139 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGA 145081 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 | |||||||| || || |||| ||| ||||| Sbjct 145080 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTC 145047 >seq636 Length=12038 Score = 105 bits (116), Expect = 8e-18 Identities = 285/428 (67%), Gaps = 6/428 (1%) Strand=Plus/Plus Query 171727 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 171786 ||| || || ||||| || | || || | | |||||||||| || ||||| | | Sbjct 3495 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3554 Query 171787 GTCTGGTTCAAT-CGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 ||||||||||| |||| || ||| || |||| |||||||||| ||| || | Sbjct 3555 ATCTGGTTCAATGCGCATACC-ATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 3613 Query 171846 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 171904 | | |||||| |||| ||||| ||| || ||||||||||| || | | || Sbjct 3614 GGTGGAAGATTGCTCGAGTCATCCGTGGA-AGGTTTGTGAAGATATAACGGGCAGAAGCT 3672 Query 171905 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATA 171964 || ||||| ||||| ||||| || |||||||| || || || || |||||||| Sbjct 3673 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 3732 Query 171965 TTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 172024 ||||| || | | ||| | || || |||||| || | | | ||||| Sbjct 3733 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 3792 Query 172025 CCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAA-CTGTGCCACCTTCATCTC 172083 || || || || || | || |||| || || |||| ||| ||| || ||||| || || Sbjct 3793 CCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 3851 Query 172084 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 172143 | ||||||| | ||| || || | | ||||||| ||| ||| ||||| || Sbjct 3852 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 3911 Query 172144 GTCGGCCA 172151 |||||||| Sbjct 3912 GTCGGCCA 3919 Score = 102 bits (112), Expect = 1e-16 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 172777 AGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACC 172836 ||| ||||| ||||| | || || | ||||||||| || || || | |||||| || Sbjct 4645 AGCTTCGCGAACATTGAGAAGTTTACCCCTGAGAGGGAAAACGCCATACTCATCACGTCC 4704 Query 172837 AACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 172896 || || | |||||||| ||| ||||| | || || ||||| || ||||||| |||||| Sbjct 4705 GACAACTGCAAGACCAGAAACGGCGAGAGCTTTGGCAGAATCTCCTTCCGTCAGGATGAG 4764 Query 172897 CGTACACTT--TCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 172954 || || || | || || |||| || || ||||||||||| || | ||| |||| Sbjct 4765 AGTGCAGTTCTTGGAGTTTCGGCCG--CCAGCATTGTTCGCATCTTCAAGCTTTACAATA 4822 Query 172955 CCAGTAATTTTG 172966 |||| |||| || Sbjct 4823 CCAGAAATTCTG 4834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597345662664040