Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 25.1_202017-04-19] 1,063 sequences; 18,448,816 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq329 159 4e-34 seq636 122 1e-22 seq517 114 2e-20 >seq329 Length=110880 Score = 159 bits (176), Expect = 4e-34 Identities = 714/1122 (64%), Gaps = 37/1122 (3%) Strand=Plus/Plus Query 106095 CCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154 ||||||| || | ||||| | || | || |||||||||| || | | ||||||| Sbjct 13856 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 13915 Query 106155 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 106214 ||| | || || | ||| || |||||| || | ||||| || || || || | Sbjct 13916 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 13975 Query 106215 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 106269 |||| | ||| | ||| | || ||| | || || || |||| || | || | Sbjct 13976 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 14035 Query 106270 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 106329 || | || || ||||| || ||||| | ||||| ||| | || ||||| || || Sbjct 14036 AAG-----CGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGA 14090 Query 106330 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386 || || || |||| || ||||| | || | | || || || || || || Sbjct 14091 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTT 14147 Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446 ||||||| ||| || || || || || |||| | ||| | |||| || | Sbjct 14148 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTC 14207 Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 || | ||||| || | || || | ||| || ||||| ||||| | | Sbjct 14208 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 14267 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 106563 ||||| | ||||| ||||| | ||| ||| || || || || | | |||||| Sbjct 14268 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 14324 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||| ||| |||| |||||||||||| ||||| || || ||||| || || Sbjct 14325 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTG 14384 Query 106624 TGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGG-CGTTGGCCCGT-CC 106680 | || ||| || || ||| | | || | |||| | | | | || ||| | || Sbjct 14385 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTT--CCCTTGCC 14441 Query 106681 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 106740 || | |||||| | || || |||||| || ||||| |||||| || || Sbjct 14442 CTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCC 14501 Query 106741 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 106800 || || | | ||||| | ||||| ||| | ||| | || || ||||||||||| Sbjct 14502 AGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAA 14561 Query 106801 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 106860 ||| || | ||||| |||| | || ||||| | | || |||| || | ||| || Sbjct 14562 AAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATG 14621 Query 106861 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920 ||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| || Sbjct 14622 GTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGC 14681 Query 106921 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974 || | || ||||| ||| |||||| || || || |||||||||| | Sbjct 14682 GAAGGCACC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTA 14738 Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 107034 | || ||||| ||||| || || | || | |||||| || || ||| || Sbjct 14739 AGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC 14798 Query 107035 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 107094 || || | | || || ||||| | |||||||| || || ||| ||||| || || Sbjct 14799 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGC 14858 Query 107095 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 107154 ||| | | ||||| | |||||||| | || ||||| ||||| |||| | ||||| Sbjct 14859 ACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 14918 Query 107155 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 107196 ||| ||||| || |||| || ||||| || ||||| || Sbjct 14919 GCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 14960 >seq636 Length=12038 Score = 122 bits (134), Expect = 1e-22 Identities = 286/428 (67%), Gaps = 8/428 (2%) Strand=Plus/Plus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 || ||||||||||| || | ||||| | | |||||||| | ||| |||||| || | Sbjct 3496 CCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATAA 3555 Query 168351 TCTGGTTCAATTGAGCGC---CCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGA 168407 ||||||||||| |||| ||||| || ||||||||||||| | | |||||| | Sbjct 3556 TCTGGTTCAAT---GCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCA 3612 Query 168408 GGATCAAAGATCTTGCGAG-CCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAGA 168466 || | ||||| |||| | || ||| ||| |||||||| || || | | || Sbjct 3613 GGGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGGGCAGAAGC 3671 Query 168467 AGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAAT 168526 || || |||||||| ||||| ||||||||||| || || || || || || || Sbjct 3672 TGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGAT 3731 Query 168527 GTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTC 168586 |||||| || | ||| | ||| || ||||| ||| | || |||| Sbjct 3732 GTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTC 3791 Query 168587 ACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTC 168646 ||||||||| || || | || |||| || || | || || || || ||||| ||||| Sbjct 3792 ACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 3851 Query 168647 ATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACC 168706 | |||| || | ||| ||| || | | || || | ||| ||| |||||||| Sbjct 3852 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 3911 Query 168707 ATCCGCCA 168714 || |||| Sbjct 3912 GTCGGCCA 3919 >seq517 Length=208906 Score = 114 bits (126), Expect = 2e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || |||||||||||| ||||| || || || || || |||||| || || Sbjct 145199 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 145140 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 117391 ||||||||||| |||||||| | ||| | || | ||| ||| || || |||||||||| Sbjct 145139 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGC-GAAAGAACCAGAGAAGAAGA 145081 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 |||||||||| ||||| |||| || |||||| |||| Sbjct 145080 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 145041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589972960630120