Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 25.1_202017-04-19] 1,063 sequences; 18,448,816 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq517 118 9e-21 seq914 109 4e-18 seq628 96.9 3e-14 >seq517 Length=208906 Score = 118 bits (130), Expect = 9e-21 Identities = 162/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| ||||| ||||||||| ||| ||||| || ||||| || | ||||| | Sbjct 130293 AGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGG--ATGTTGTAGTCGGAAAGAGTAC 130350 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| ||||||||||| || |||||||| | || |||||||||||||||||| |||| Sbjct 130351 GACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTT 130410 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | || || ||||| || || || || || || |||| || | | ||||||| Sbjct 130411 CCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAG-ACGACTCGACTTCGAGA 130469 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | ||| || || || | ||| || || || || |||||| Sbjct 130470 GTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATA 130511 Score = 102 bits (112), Expect = 7e-16 Identities = 159/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | || ||||| || || ||| ||||| ||||||||||| | |||||| Sbjct 130799 GAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGG--ATATTGTAATCGGAAAGAGTT 130856 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||||| |||||||| ||||| | || ||||| |||||||| || || Sbjct 130857 CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCC 130916 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || || ||||| || || || || || || ||||| | || | | ||| || Sbjct 130917 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC-GCTCGATTCGACTTCAAG 130975 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| ||||| || || || ||||| ||||| ||||||||| Sbjct 130976 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 131018 Score = 98.7 bits (108), Expect = 8e-15 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | || ||||| || || ||| |||| |||||||||||| | |||||| Sbjct 130011 GAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTG--AATATTGTAATCGGAAAGAGTT 130068 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||||||||||||||| || || |||| |||||||||||| || || || Sbjct 130069 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 130128 Query 563374 TCTTTATCTTGAATTTT 563390 || || ||||| || || Sbjct 130129 TCCTTGTCTTGGATCTT 130145 >seq914 Length=82405 Score = 109 bits (120), Expect = 4e-18 Identities = 142/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-A 550122 ||||| ||||| || || |||| || ||||| |||||| |||||| || |||||| | Sbjct 443 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 384 Query 550123 TTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTT 550180 ||| | |||||||| || || | |||| || || |||||| ||| ||| |||| Sbjct 383 CTTA-TCGGTGATGCCGCGAAGAACCAAGTTGCAATG--AATCCTTACAACACTGTTTTC 327 Query 550181 GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAG 550240 |||||||| || || || || | | ||||| ||| | |||||||| || |||||| Sbjct 326 GATGCTAAGCGGTTGATCGGCCGTAAATTTAACGATGCCGAAGTTCAGGCCGACATGAAG 267 Query 550241 CATTGGCCTTTC 550252 |||||||||||| Sbjct 266 CATTGGCCTTTC 255 >seq628 Length=360347 Score = 96.9 bits (106), Expect = 3e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914 |||||| || ||||||||||| | || || | ||| || | | ||| || ||| |||| Sbjct 35717 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 35658 Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974 ||||||||||||||| || ||||| || | || |||| ||| | |||||||| || | Sbjct 35657 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 35598 Query 390975 CATAACTTGGAAGAAAAATTC 390995 |||| | ||||| | ||||| Sbjct 35597 CATAGCGTGGAACCAGAATTC 35577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029239783765870