Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 25.1_202017-04-19] 1,063 sequences; 18,448,816 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq517 87.8 1e-12 >seq517 Length=208906 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | ||||||| |||||| || || || |||||||| || Sbjct 131141 ATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTT 131200 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || |||||| | || | ||||| ||| || ||||||||||| || Sbjct 131201 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTGAT 131260 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || | || || || || || ||||| Sbjct 131261 AGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 131296 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| || | ||| || ||||| || |||||||| || ||||| | || || || Sbjct 130014 ACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCC 130073 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| || || | || | || ||||||||| || || |||||||| || Sbjct 130074 ATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTT 130133 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||||| | || | || || ||| ||||||||||| || Sbjct 130134 GTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACTTCAAGAGTGAT 130193 Query 29751 AGTTTTGCCAGT 29762 || || || || Sbjct 130194 TGTCTTACCCGT 130205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385214209364883