Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772 25.1_202017-04-19] 1,063 sequences; 18,448,816 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq329 192 7e-44 seq517 161 1e-34 seq636 98.7 1e-15 >seq329 Length=110880 Score = 192 bits (212), Expect = 7e-44 Identities = 805/1255 (64%), Gaps = 37/1255 (3%) Strand=Plus/Minus Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395 || ||||| || ||||| || ||||||||||||| |||||||| | |||| ||| Sbjct 14960 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 14901 Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455 || ||||| || | |||||||| | ||||| | | ||||| || ||||| ||| Sbjct 14900 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 14841 Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 || || |||||||| | ||||| || || | | || || || ||| || Sbjct 14840 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 14781 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || |||||| | || | || || ||||| ||||| || | | |||||||||| || Sbjct 14780 ACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGA 14721 Query 104576 TATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629 || || |||||| ||| ||||| || | |||| ||||||||||||| Sbjct 14720 TACGTTGATCAAGGTGGTAACAAGCGTCCT---GGTGCCTTCGCCATCTATCTTGAGCCT 14664 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689 |||||||| ||| | | || ||| |||| || | ||||| ||| | ||||||| Sbjct 14663 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 14604 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 || || ||||| |||| ||| |||||||| | ||||| ||||||||| | || || Sbjct 14603 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 14544 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 ||| ||||| |||| | ||||| | | || ||||| || |||| | Sbjct 14543 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 14484 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTG-CGAC 104868 ||||| || |||||| ||||| | ||||| || | ||| | | || | || Sbjct 14483 GGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGA-GAGGCAGGGCAAGGGAAGGAAAAC 14425 Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 | ||| | || | | ||| || || ||| || ||||||||||||||||| | Sbjct 14424 TATCAAAGC-CCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCC 14366 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | ||||| ||||| || || ||| ||| || |||||| | | ||| | Sbjct 14365 CTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCA 14306 Query 104988 TCAA---GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 |||| ||| || |||||||| |||||| |||| | | | ||||| | Sbjct 14305 TCAAATCCAGT---AACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTG 14249 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACA 105103 |||| ||||| || || || | ||||| || | || || || | || | Sbjct 14248 CTGTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGA-CCTGGAACGTCGCGTC 14190 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 | ||| | |||| || ||||| |||| || ||| || || ||||| ||| || Sbjct 14189 TATGACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTA 14130 Query 105164 ATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220 || | || | || || || |||| || || || || || ||| | || || Sbjct 14129 ATCACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGG 14073 Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 105280 || ||||||| ||||| |||||||| || || | ||||| |||| | || Sbjct 14072 CCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGTTC 14013 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || |||| || || | |||| ||||| | || || ||||| || || ||||| || Sbjct 14012 GACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGGCG 13953 Query 105341 CTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 ||||||||| | || | || |||| |||| | |||||| | | || |||||| Sbjct 13952 CTTGAGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTTCT 13893 Query 105401 CCAGCTTCAC-AAGGG-GTGCTTCAATTTGATATGTGGGAAGGTG---AGACCAAGCTTC 105455 || | || | ||||| | ||||| | || ||||||| ||| ||| | ||| Sbjct 13892 CC--CATCTCTAAGGGTATCCTTCAGTACGACATGTGGGGCCGTGTTCCCACCGACCTT- 13836 Query 105456 ACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCC 105515 | |||||| || || |||| ||| |||| ||| | | ||| | | | Sbjct 13835 --TGGGACTGGACAGAGCTGAAGGCCAAGATCGCACAGAACGGTGTGAGGAACTCTTTGC 13778 Query 105516 TCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570 || | || || ||||| || ||||| || | |||||||||||| || ||||| Sbjct 13777 TCGTCGCCCCTATGCCTACTGCCTCAACGTCTCAAATCTTGGGTTGGAACGAATG 13723 >seq517 Length=208906 Score = 161 bits (178), Expect = 1e-34 Identities = 214/289 (74%), Gaps = 10/289 (3%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGC-TCTTTGAAGCCATCCA 94730 ||||| |||| || |||||||| |||| || ||| | | ||||||| || || | Sbjct 144915 CTCATCGACACCTACATTAAGGACACTGCTC-GACGAAACTTCCTCTTTGACGCTATGGA 144973 Query 94731 AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAA 94787 || |||| ||||| | |||||| || || |||||| | ||| | ||| ||| Sbjct 144974 CACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAA 145033 Query 94788 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 || ||| | || ||||||||| | || ||||| || ||||||||||||||||| Sbjct 145034 ATCTTGTTTCG--GC-GAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTC 145090 Query 94848 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 94906 |||||| ||| ||| | || | ||||| |||||||||||||||||||| ||||| || Sbjct 145091 TGGTTCTTTC-GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCT 145149 Query 94907 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| |||||||| |||||||| |||||||| |||||| || ||||| Sbjct 145150 TCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGC 145198 >seq636 Length=12038 Score = 98.7 bits (108), Expect = 1e-15 Identities = 281/427 (66%), Gaps = 4/427 (1%) Strand=Plus/Plus Query 168277 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 168336 ||| ||||||||||| |||| ||| || | | ||||| || | || |||||| | | Sbjct 3495 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3554 Query 168337 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 168396 ||||| |||||| | |||||| || |||| |||||||| | |||||| || Sbjct 3555 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 3614 Query 168397 ATCAAAGATCTTTCG-GGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 168455 | ||||| ||| | |||| || || ||||| |||||||| | | || | Sbjct 3615 GTGGAAGATTGCTCGAGTCATC-CGTGGAAGGTTTGTGAAGATATAACGGGCAGAAGCTG 3673 Query 168456 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 168515 | || |||||||| ||||| |||||||| || || || || || |||||||| | Sbjct 3674 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 3733 Query 168516 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 168575 |||| || | | ||| | || || |||||| ||| | | | | |||||| Sbjct 3734 TGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCAC 3793 Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 168634 | ||||| || || | ||||| | || | |||| ||| ||| || || || || || Sbjct 3794 CATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTCT 3852 Query 168635 TCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 168694 | |||| || | ||| || | | | |||||| || || ||| |||||||| Sbjct 3853 TTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 3912 Query 168695 TCCGCCA 168701 || |||| Sbjct 3913 TCGGCCA 3919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253049922120