Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F9001772
25.1_202017-04-19] 1,063 sequences; 18,448,816 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq517 129 4e-25
>seq517
Length=208906
Score = 129 bits (142), Expect = 4e-25
Identities = 172/235 (73%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || |||| || | ||| || || || || ||| |||||||||||| ||||||||
Sbjct 130787 CATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATC 130846
Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224
|| ||||| || |||| || || ||||| ||||| || ||||| |||||||| ||
Sbjct 130847 GGAAAGAGTT--CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCA 130904
Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGG 44282
| ||| | ||| ||||| || ||||| ||| || ||| | ||||| ||| |
Sbjct 130905 GGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGT--CGATGGTATCGCTCG 130962
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| || || | ||||| || || || |||||||| || ||||||||||||||
Sbjct 130963 ATTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 131017
Score = 107 bits (118), Expect = 1e-18
Identities = 122/162 (75%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242
|| || |||||||| || ||||||||||| || ||||| || | ||| | ||| |||||
Sbjct 131142 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTTG 131201
Query 44243 TCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300
||| ||||| ||| || ||| | |||||||||| || ||||| || | || |
Sbjct 131202 TCCTGGATCTTGGCCTTGACATTGT--CGATGGTGTCGGAAGACTCCACTTCAAGAGTGA 131259
Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342
| ||||| || ||||| ||||| ||||| ||||||||| |||
Sbjct 131260 TAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCATGGTGT 131301
Score = 105 bits (116), Expect = 5e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| || ||||||||||||||||| |||| || || | || ||
Sbjct 130302 ACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCA 130361
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| || || || ||||| ||||| || |||||||| | ||| | ||||||||| |||
Sbjct 130362 AGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 130421
Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| || | || ||| | || ||||| | || || || || | || || |||||
Sbjct 130422 ATCTTC-GCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTT 130480
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || | ||||| || ||||| |||||
Sbjct 130481 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 130510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359985736211871
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |