Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq14 118 1e-21 seq18 104 3e-17 >seq14 Length=977059 Score = 118 bits (130), Expect = 1e-21 Identities = 424/658 (64%), Gaps = 4/658 (1%) Strand=Plus/Minus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || ||||| | || ||| || ||||| ||| || || ||||| ||||| || | ||| Sbjct 768388 GGGCACATGAGCGTCCAGTCGCCGTCGGCCTCGACGCGCTTCATGAAGAGGTCCGAGATC 768329 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 || || || || || || | || | |||||| || || ||||| | || Sbjct 768328 CAGAGGGCGTAGAACAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGGTTCTTCCTGAGG 768269 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 |||||||| | | || || | ||||| || || | ||| || | | | || || Sbjct 768268 TCGAGGAAGTCGAAGATGTCGGCGTGCCAAGGCTCGAGGTAGATCGCAAAGGCACCGGGA 768209 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || ||||| || | ||| | || ||| | || | | | ||| || Sbjct 768208 CGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGGCGTCGTACGCGCGGAGCATCGGG 768149 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295 | ||||| || || ||| ||||| |||| ||| ||| || |||| || || || Sbjct 768148 ACGATACCGTTCGAGTAACCGTTGGTACCGGCGATGTAGGAGCCCTTGGCGCGGATGTTG 768089 Query 54296 CTAAT-TGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CG 54353 || ||| ||||| || || || || | || ||||| ||||| ||| || | || Sbjct 768088 TGGATGTGA-AGACCGATACCACCGGCGGTCTTTGAGATCTGAGCGCA-CGTCTTGAGCG 768031 Query 54354 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 54413 | || ||||| || || || || ||| ||||| | || || || ||||| | Sbjct 768030 TCTCGTAGATCCCGTCAATCGAGTCGTCCCTCATGGCGACGAGGAAGCACGACGACATCT 767971 Query 54414 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 54473 || | || || || || || | || || || ||||| || || || || | Sbjct 767970 GGGGGTTGGGCGTGCCGGCGTTGAAGAGCGTGGGCGAGGCGTGAGTGAAGTATCGCTCCG 767911 Query 54474 AAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGA 54533 | | || |||||||||||||| | ||| || | || || || || || |||| Sbjct 767910 ACATGAGGTTGTACGTCTCGATGACCTTGTCGATGTTGGATCCGTGGATACCGACGGCGA 767851 Query 54534 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGG 54593 ||||||| | ||||||||| |||| || || |||||| ||| || || | ||| | Sbjct 767850 CACGCATGATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGATGCGGAGGAGGTACG 767791 Query 54594 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 | || | || || || ||||| |||||||| | |||||| || ||||| || || Sbjct 767790 ACCGCTCGAGCGTCTTGAAGCCAAAGTAGTTGTACGCAAAGTCGCGGTCGTAGATGAT 767733 >seq18 Length=823183 Score = 104 bits (114), Expect = 3e-17 Identities = 151/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || || || ||| ||| ||||||||||| | || | |||||||| || || Sbjct 29453 CAAGCACGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGT 29512 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 ||| |||||||| ||||| ||||| || ||||| || || || || || || || || || Sbjct 29513 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGGCGAACGAGCCGGAGAA 29572 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC---TGTC 24307 ||| || || || || || |||||||| || || | || | | || || |||| Sbjct 29573 GAAGATGCCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCGAACGTGGAGCGCGTGTC 29632 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 24340 |||||||| ||||||| |||||||||| Sbjct 29633 GGTGATCCACTTGAGAGCCCATGCGGCCTTCTT 29665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721191816400