Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq10 145 9e-30 >seq10 Length=1243995 Score = 145 bits (160), Expect = 9e-30 Identities = 245/347 (71%), Gaps = 12/347 (3%) Strand=Plus/Plus Query 145926 CGGGTTCCAGGCGGTGAGGACGAGCCTCCTG-CTCTCGGGGTTCCTCTTGATCTCCCCTA 145984 |||||||||||| | |||||||| || |||| | |||| || ||||||||| | | Sbjct 823606 CGGGTTCCAGGCAGAGAGGACGATCCGCCTGTCGGTCGGA-TTATTCTTGATCTTATCAA 823664 Query 145985 TCA---GGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA--GTCCAC 146039 ||| || || | ||| ||||| || | ||| ||||| |||| |||| | Sbjct 823665 TCACCTGGGCC---AACTGATCCACTCCTTTGCCCGTATAATCA-TCTTCACACGTCC-C 823719 Query 146040 GTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC 146099 || | |||||||| ||||||||||||||||| || ||||| || || || || | Sbjct 823720 ATAATCCGCCCCGAAATGCCTCCACTGGAACCCATACACGGGTCCGAGATCGCCTTCCCT 823779 Query 146100 CCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTT 146159 || || |||| |||| | || ||||| | |||| ||||||||| | |||||||| || Sbjct 823780 CCGATGACCCAACCCGACGCGATCGAGGTACTCCCTCGACCCGTTGCCTTCCCAGATATT 823839 Query 146160 GACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTC 146219 || ||| | |||| || | ||| ||||||| | ||| | |||||| || ||||| Sbjct 823840 GATCCCCTTGTCGGACAGGACTTTGCCGTCCGTGCAGCCCGCCACGAACCACAGGAGCTC 823899 Query 146220 TTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 || | || |||| | |||||| | ||||||||| |||| |||| Sbjct 823900 CTCTACCACTCCCCGCAGGAAGACGCGCTTGGTGGTGAGCAACGGGA 823946 Score = 107 bits (118), Expect = 2e-18 Identities = 204/297 (69%), Gaps = 9/297 (3%) Strand=Plus/Plus Query 145569 GGGGTGGTAGCCCTCCAGCGCAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCG 145628 ||| | ||| ||||||| | |||||||| | |||||| | || |||||| | | | Sbjct 823055 GGGCTTGTATCCCTCCACGACGAAGTCCTCTGTCCTGAACCCGTCGATGTCCCCGATCTC 823114 Query 145629 CCTCAGGATCCTG---AGCCTGGGAAAGGGC----CG-GGGGCTCCTGGTC-AGCTGGAG 145679 | | | ||||| | | || || ||| || ||||||| || ||||| | Sbjct 823115 CTCCTTGGTCCTGGCAAACTTGAGAGTGGGGAACTCGCGGGGCTCTCTCTCGAGCTGAAC 823174 Query 145680 CTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTC 145739 || || |||||||| |||| ||||||||||||||| |||| | ||||||| || Sbjct 823175 CTGGAGCGGCTCCACATGGTCCTTGTAGACGTGCGCGTCGCCCATCTGGAGGATGAACTC 823234 Query 145740 CCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTAT 145799 | || |||||| | | |||||| ||||| || || || ||||| ||| || Sbjct 823235 GTGTGCGTCACAGCCCGTCACGAGGGCGATCATGTGCGTGAGGAGCGAGTACGAGGCGAT 823294 Query 145800 GTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAG 145856 |||||| || || || || || | ||| | ||||||||| |||| | |||||||||| Sbjct 823295 GTTGAAAGGGACGCCGAGACCGAGGTCGCACGAGCGCTGATACATCAGGCAGGAGAG 823351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076394322200