Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq18 194 2e-44 seq5 129 6e-25 >seq18 Length=823183 Score = 194 bits (214), Expect = 2e-44 Identities = 196/255 (77%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| | |||||||| || || |||||| || | ||||||||| ||||| || | Sbjct 29700 TGTTCGAGGCCATCGACACCATCCCGTGCATCCAGAAGAAGGCCGCATGGGCTCTCAAGT 29641 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| ||| || || | |||| |||||| || | ||||| || |||||||||| Sbjct 29640 GGATCACCGACACGCGCTCCACGTTCGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGG 29581 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || ||||||| || ||| |||||| | || || ||||||||||| ||||||||||||| Sbjct 29580 GCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGC 29521 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 ||||||| || ||| ||||||||||||||| | ||||||||||| || |||||||| Sbjct 29520 CCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTG 29461 Query 117186 CCTGTTTGCTGTTCA 117200 | || ||||| |||| Sbjct 29460 CGTGCTTGCTCTTCA 29446 Score = 145 bits (160), Expect = 8e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||||||||| || ||||| |||| ||||| | | Sbjct 46980 AATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTC 46921 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | |||||| || || | ||||| ||||||||||| | ||||| Sbjct 46920 CGACACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 46861 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||| | ||| ||||| |||||||| |||| || |||||| ||||||||| Sbjct 46860 ACAACGTCTCATTTTCGCCGGCAAGCAGCTGGAAGACGGCCGAACCCTCTCCGACTACAA 46801 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| || ||| |||| || || || || Sbjct 46800 CATCCAAAAAGAGTCCACCCTCCACCTCGT 46771 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| |||| || || | | Sbjct 47207 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCGTCG 47148 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| ||||| ||||| ||||||| Sbjct 47147 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCA 47089 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | ||| ||||| ||||| || || | ||||||||| ||||||||| Sbjct 47088 GCAACGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAA 47029 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 47028 CATCCAGAAGGAGTCGACCCTCCACCTCGT 46999 Score = 131 bits (144), Expect = 2e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| || |||||| |||| ||||| | | |||| | | | | |||||| Sbjct 46109 ACCGGCAAGACGATCACCCTCGAGGTCGAGTCTTCTGACACCATTGACAATGTCAAGGCG 46050 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| ||||| |||||| ||||||| || || || |||| ||||||||| Sbjct 46049 AAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGTCTGATCTTCGCGGGCAAG 45990 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| | ||||| | |||||||||||||||||||||| | |||||||| Sbjct 45989 CAGCTCGAGGACGGAAGGACCCTGAGCGACTACAACATCCAGAAGGAGTCGACGCTGCAC 45930 Query 40894 CTAGT 40898 || || Sbjct 45929 CTCGT 45925 Score = 131 bits (144), Expect = 2e-25 Identities = 142/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 ||||| || ||||| ||| |||| ||||| | | |||| | | | |||| |||||| Sbjct 46391 ACGGGAAAGACCATTACCCTCGAGGTCGAGTCGTCTGACACCATCGACAACG-TCAAGGC 46333 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| |||||| |||||||||| || ||||||| ||| ||||| Sbjct 46332 GAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAA 46273 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| || ||||| ||||||||||||||||||||| | ||||| || Sbjct 46272 GCAGCTCGAAGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTTCA 46213 Query 40893 TCTAGT 40898 || || Sbjct 46212 CCTTGT 46207 Score = 102 bits (112), Expect = 8e-17 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| || || ||||||||| |||| ||||| | | |||| | | | |||| |||| Sbjct 47473 CTCACCGGAAAGACCATCACCCTCGAAGTCGAGTCTTCGGACACCATCGACAACG-TCAA 47415 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| ||||||||||| |||||||||| || || |||| ||| || Sbjct 47414 GGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTGATCTTCGCCGG 47355 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||| ||||| || |||| |||||||| ||||||| Sbjct 47354 CAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTACA 47317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 116779 CGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGA 116838 ||||||||||||||||||||| || |||||||| ||| || ||||| ||| ||||| Sbjct 29980 CGACGGCATCGTCAACGAGAACCTCGTCGAGCGATTCTCTGCCGAGGTCCAGTGCGCCGA 29921 Query 116839 GGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| |||||||||||| || |||||| Sbjct 29920 GGCCAAGTGCTTCTACGGTTTCCAGATC 29893 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 |||||||| || | |||||||| || || |||| || ||||| ||||| || |||| Sbjct 46601 GAGGGCATTCCGCCAGACCAGCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGACGGT 46542 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| | ||||||||||||||||||||| | ||||| || || || Sbjct 46541 CGCACCTTGTCGGACTACAACATCCAGAAGGAGTCGACGCTCCACCTCGT 46492 >seq5 Length=1498571 Score = 129 bits (142), Expect = 6e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 || |||||||| || |||||| |||| || || | |||||| | | | | ||||| Sbjct 692242 CTTACGGGCAAGACGATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAG 692183 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 | || || | ||||| ||||| |||||| ||||||| || || || |||| ||||||| Sbjct 692182 GCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGCCTGATCTTCGCGGGC 692123 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| || |||||| ||||||||||||||||||||| | || || Sbjct 692122 AAGCAGCTCGAGGACGGCCGAACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTC 692063 Query 40891 CATCTAGTG 40899 || || ||| Sbjct 692062 CACCTCGTG 692054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218845786800