Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq18 116 3e-21 seq3 82.4 7e-11 >seq18 Length=823183 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | ||||| |||||||||||| Sbjct 47004 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTG 47063 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| | || || || ||||| || ||||| || ||||||||||| || || Sbjct 47064 CTTGCCGGCGAAAATCAGGCGTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTT 47123 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||||| ||| ||||||| || | || |||||||| Sbjct 47124 GGCCTTGACGTTGTCGATCGTGTCCGACGACTCAACCTCGAGAGTGATGGTCTTGCCGGT 47183 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || ||||||||||| Sbjct 47184 CAGAGTCTTGACGAAAATCTGCAT 47207 Score = 100 bits (110), Expect = 2e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||||||| || | ||||||||||| || || Sbjct 45937 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTCCTTCCGTCCTCGAGCTGCTTGCCC 45996 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||| || || || || || ||||||||||| || || || Sbjct 45997 GCGAAGATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTG 46056 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 || | || | |||||| | ||||||||||| ||| | ||| |||||||||| Sbjct 46057 ACATTGTCAATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTGCCGGTCA 46111 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||||||||| |||||||| ||| | || || || || ||||| Sbjct 46776 GTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCCAGCTG 46835 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| | |||||||| || || || || || |||||||||||||| || || Sbjct 46836 CTTGCCGGCGAAAATGAGACGTTGTTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTT 46895 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||| | ||||||||||| || | ||| ||||| || Sbjct 46896 CGCCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTGCCCGT 46955 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 46956 GAGGGTCTTGACGAAGATCTGCAT 46979 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| || || ||| |||| ||||||||||| || ||||| |||||||||||| Sbjct 47340 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTG 47399 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | |||| |||||||| |||||| |||| ||| | Sbjct 47400 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGGGTGATG 47459 Query 118704 GTTTTGCCGGTCAG 118717 || || ||||| || Sbjct 47460 GTCTTTCCGGTGAG 47473 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || | || || || |||||||| || || Sbjct 46219 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCTTCGAGCTGCTTGCCG 46278 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||||||||||||||| || || || || ||||||||||| || || || Sbjct 46279 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTG 46338 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 || | |||| |||||| | ||||||||||| ||| | || || || |||| Sbjct 46339 ACGTTGTCGATGGTGTCAGACGACTCGACCTCGAGGGTAATGGTCTTTCCCGTCA 46393 >seq3 Length=1717572 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| || || ||| | ||||||||||| || || || || || ||||||||| Sbjct 192643 TCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCCGGGGGGATACCCTCCTTG 192702 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | |||| |||||||| | ||| ||||||| ||| | Sbjct 192703 TCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTGATG 192762 Query 118704 GTTTTGCCGGTCAGA 118718 || || ||||| ||| Sbjct 192763 GTCTTCCCGGTGAGA 192777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830109198060