Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq18 136 3e-27 seq5 84.2 1e-11 >seq18 Length=823183 Score = 136 bits (150), Expect = 3e-27 Identities = 147/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 ||||| || |||||||||||||| || ||| |||| |||| ||||||||| |||||| Sbjct 46789 TCTTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCCAGCTGCTTGCCGGCGAAA 46848 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| || || ||||| | |||| | || ||||||||| ||||| ||| | || Sbjct 46849 ATGAGACGTTGTTGGTCTGGCGGG-ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 46907 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| |||| ||| ||||| || | |||||| || ||||| ||||| || || || Sbjct 46908 GTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGAC 46967 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 46968 GAAGATCTGCAT 46979 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | || || ||||| | || || ||||| |||||||||||||| Sbjct 46980 TCCACCGCGGAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 47039 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | ||||||||| |||||||| || || |||||||| || Sbjct 47040 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGTTGCTGGTCCGGAGG 47099 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | | |||| || | ||| || || Sbjct 47100 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCAAC 47159 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| ||||| || || || |||||||| Sbjct 47160 CTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 47207 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | || || ||||| | || || ||||| ||||||||||| || Sbjct 46188 TCCACCACGCAGTCGGAGAACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 46247 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| |||| || | ||||||||| ||||| ||||| ||||||||||| ||| Sbjct 46248 AAGGGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 46307 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | | || | || | ||| ||||| Sbjct 46308 GATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGAC 46367 Query 34342 GTCCACCGTGATGGTTTTGCCGGT 34365 || | || ||||| || || || Sbjct 46368 CTCGAGGGTAATGGTCTTTCCCGT 46391 >seq5 Length=1498571 Score = 84.2 bits (92), Expect = 1e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||| ||||| | || || ||||| ||||||||||| || Sbjct 692037 CCACCACGCAGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 692096 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || || ||||| ||||| ||| Sbjct 692097 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGG 692156 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | |||| || || || Sbjct 692157 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACC 692216 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAG 34368 || | ||||| || ||||| || || Sbjct 692217 TCGAGGGTGATCGTCTTGCCCGTAAG 692242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071783440800