Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq14 336 2e-87 seq18 172 5e-38 >seq14 Length=977059 Score = 336 bits (372), Expect = 2e-87 Identities = 1126/1734 (65%), Gaps = 36/1734 (2%) Strand=Plus/Minus Query 22245 ACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCA 22304 |||||| |||||| |||||||| || || || || ||||| | | ||||| ||| Sbjct 769455 ACGACTCACTCTGGTCGATAAAGGCACCACGGTCCGCGGCGAGGT----CAATGACCGCC 769400 Query 22305 TC----GACATTTCCCATACGGTCTTGTACAGTTGCCT-GATCTCTAACGGTATCGATTC 22359 | || || ||||| || |||||||| | | |||| || |||| || || | | Sbjct 769399 TTTTGGGAAATCTCCCAGACCGTCTTGTAGA-TCGCCTTGAGCTCTGCGGGGAT-GCTCG 769342 Query 22360 GATCCT-CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACA 22418 || | | ||||| || ||| | ||||| | || || || | |||| ||| | Sbjct 769341 GAACGTTCTGGATCGAGCCGCCCGCGGCGATGATGAGGTTCTTCATGTTCTCGTCCCAGA 769282 Query 22419 AACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACA 22478 ||||| | | | | ||| || || || || || || || || || || | Sbjct 769281 GACCGAGGTTGATGAGATCGCGGAGCAACCAGGGGCAAACGACCTGGAAGTCACCAGAGA 769222 Query 22479 AGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTA 22538 || ||||| ||| | | || ||| | || ||||| | || || || || | Sbjct 769221 GCACACGGCGGGCGTACAGCATCGAGGTGTAGGGCTCGAAGCACTCGTTCCACCCGAGGA 769162 Query 22539 TCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT 22598 |||| | |||||| ||||| ||||||||||| | || |||||||| | | ||||||| Sbjct 769161 TCTGCGAGGTCGAGGCGGTGGGCATCGGCGCGACGAGGAGCGAGTTGCGGACACCGTGCT 769102 Query 22599 --TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTC 22656 |||| || | ||| | | ||||||||| || |||| ||| || | | Sbjct 769101 GCTTGATGTTCTCGCGGAGAGGAGC--CCAGTCCCAGAGGTCGGTCGGG---ACGCGGCC 769047 Query 22657 CCACATATCGTATTGCA--ACACGCCGCGACTCGCCGGGCT-GCCTTCGTACGTTTCGTA 22713 ||||| ||| || | | || | || | |||| ||| ||||| || ||||| Sbjct 769046 CCACAGGTCGGGCTGGAGGAGACCCTTGGA---GATGGGCGAGCCCTCGTAGGTCTCGTA 768990 Query 22714 CGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTC 22773 | ||| | | ||| || ||||| |||||| | ||| ||| || || ||||| Sbjct 768989 CTTGCCAAACTCCTGGGCGAGCTCGCACGACGCCTCGAGAGCGGCGTGGTAGATCGTCTC 768930 Query 22774 GAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCAC 22833 |||||| | |||| | ||| ||||||| ||| ||||||| |||| || Sbjct 768929 GAAGATCTGGATGTTGAGCTCGCGGGCGGCGGGCGAGTCGAACGGCATGCGCAGAGCCAT 768870 Query 22834 GAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACAC 22893 || || || || | |||||| || || | |||| || |||| || ||||| Sbjct 768869 AAAGGCATCGGCGAGACCCTGGACACCGAGGCCGACAGGGCGGTGACGCATGTTCGAGTT 768810 Query 22894 TTTTGCCTCGGGCAAAGGATACCAATT-CGAATCGATTGTTCTGTTCAAGTTTCTGGTCA 22952 ||||| | ||| || | || || | ||| ||| | ||| |||| | Sbjct 768809 GCGGGCCTCCTTGACAGGGTAGTAGTTGCGGGT-GATGACCGTGTCGAGGTTCTTGGTGA 768751 Query 22953 CAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC-CGAT---TGTACAACA 23008 | | || || || | |||||||| || | || | ||| | ||| Sbjct 768750 CGACCTTTGTGATCTCGTGGAGCTTCTTGAAGTCGTAGACCCTGCGCTCCATGT-CGACA 768692 Query 23009 AACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTAC 23068 ||| | || ||||| |||||| || ||||| ||||| |||||||| || | |||| Sbjct 768691 AACGCGGGGAGGGCGAGCGAGGCGAGGTTGCAGACGGCGACCTCGTCGGGGGCAGAGTAC 768632 Query 23069 TCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT-CTGGTTGCT 23127 || | || ||||| || || ||| |||| || ||||| | | ||| ||||||| Sbjct 768631 TCGATGATCTCGGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGT-GCTGCTGGTTGGA 768573 Query 23128 TTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTC 23187 ||| ||| | ||||||||||||||| | || || |||||| ||| | ||| Sbjct 768572 CTTTGCGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCGGTCTCGGTCTGGGCCTC 768513 Query 23188 GATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCT 23246 || ||| || ||| | |||| || | | |||| || ||| ||| | | || Sbjct 768512 GAGGATGGCAAACCAGAGCTTCTGCGCCTTGAT-CGTCTTGCGACCCTTGCCGGCCTGCT 768454 Query 23247 CGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT 23306 |||| | | ||| | | ||||| | | | |||| |||||| |||||||| | | Sbjct 768453 CGTAGCTCTCGTAGAGCTTCTCAAACTGGTCGCCGTGCACGTCGGCGAGGCCGGGGCACT 768394 Query 23307 GCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCG 23366 || |||||||| |||| ||| || ||||| |||| || || |||| Sbjct 768393 CGGCGGGGCACATGAGCGTCCAGTCGCCGTCGGCCTCGACGCGCTTCATGAAGAGGTCCG 768334 Query 23367 GTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTT 23426 ||||| || ||||||||||| || |||||||| || ||||| |||||| |||||| Sbjct 768333 AGATCCAGAGGGCGTAGAACAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGGTTCTTCC 768274 Query 23427 TCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGC 23486 | | || | ||||| || | ||| || ||||| ||||||||||| | ||||| || | Sbjct 768273 TGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCCAAGGCTCGAGGTAGATCGCAAAGGCAC 768214 Query 23487 CCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCA 23546 | || | ||| ||||| ||||| |||||||| ||||| ||| || |||| | | |||| Sbjct 768213 CGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGGCGTCGTACGCGCGGAGCA 768154 Query 23547 TCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAA 23606 |||| |||| |||||| || ||| || || | || || || || || | Sbjct 768153 TCGGGACGATACCGTTCGAGTAACCGTTGGTACCGGCGATGTAGGAGCCCTTGGCGCGGA 768094 Query 23607 CGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCA 23666 |||||| | ||| | ||| || || ||| | | || || ||| ||||| || | Sbjct 768093 TGTTGTGGATGTGAAGACCGATACCACCGGCGGTCTTTGAGATCTGAGCGCACGTCTTGA 768034 Query 23667 GAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACA 23726 | || |||||||| || || || ||| || | | ||||| | ||| ||||| |||| Sbjct 768033 GCGTCTCGTAGATCCCGTCAATCGAGTCGTCCCTCATGGCGACGAGGAAGCACGACGACA 767974 Query 23727 TTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCAT 23786 | || | |||||||| |||| ||| || || || |||||| || ||||||| | Sbjct 767973 TCTGGGGGTTGGGCGTGCCGGCGTTGAAGAGCGTGGGCGAGGCGTGAGTGAAGTATCGCT 767914 Query 23787 TCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGG 23846 |||||| || |||||||| |||||| | || |||| |||||| ||||||| || Sbjct 767913 CCGACATGAGGTTGTACGTCTCGATGACCTTGTCGATGTTGGATCCGTGGATACCGACGG 767854 Query 23847 CGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGAT 23906 |||| ||||| ||||||| || |||| |||||| | |||||| || || || | Sbjct 767853 CGACACGCATGATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGATGCGGAGGAGGT 767794 Query 23907 ATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 | || || | | ||| || || ||||| |||| || |||||| || |||| Sbjct 767793 ACGACCGCTCGAGCGTCTTGAAGCCAAAGTAGTTGTACGCAAAGTCGCGGTCGT 767740 >seq18 Length=823183 Score = 172 bits (190), Expect = 5e-38 Identities = 236/323 (73%), Gaps = 10/323 (3%) Strand=Plus/Minus Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || | || || || |||||||| |||||| | |||||| || | Sbjct 29773 GAGAACATCCACTCCGAGACTTACTCCCTCCTCATCGACACGTACATCAAGGACGCCGCC 29714 Query 57867 -GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCCAAGAAGGCAG 57924 | | |||| |||||| | || ||||| || || |||| | ||| |||||||| | Sbjct 29713 CGCCGATCGTAC-CTGTTCGAGGCCATCGACACCAT-CCCGTGCATCCAGAAGAAGGCCG 29656 Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCG 57981 ||| | |||| ||||| | || |||| |||||||||||||| | || |||| Sbjct 29655 CATGGGCTCTCAAGTGGATCAC---CGACACGCGCTCCACGTTCGCCGAGCGTCTCATCG 29599 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 | || ||||||||||| || || ||||| || ||| || || | || || ||| | | Sbjct 29598 CCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCTGGCTCA 29539 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||| |||||||| ||||||||||| || || ||||||| | || ||||| ||||||| Sbjct 29538 AGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGTGACGAGG 29479 Query 58102 GTCTCCATACTGATTTTGCGTGC 58124 ||||||| || || ||||||||| Sbjct 29478 GTCTCCACACCGACTTTGCGTGC 29456 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||||||||| ||||| || ||||| |||| ||||| |||| Sbjct 47207 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCGTCG 47148 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| || | || || |||||| Sbjct 47147 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 47088 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || ||||| ||||| ||| | || || || | ||| || ||| Sbjct 47087 CAACGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 47028 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || ||||| || || || || ||| Sbjct 47027 ATCCAGAAGGAGTCGACCCTCCACCTCGTTCTT 46995 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAAC 31274 |||| || || || || ||| |||| || || |||| |||| |||| | ||||| Sbjct 46393 TGACGGGAAAGACCATTACCCTCGAGGTCGAGTCGTCTGACACCATCGACAACGTCAAGG 46334 Query 31275 AGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCA 31334 || || ||||||||| || | || || |||||||||||||| || ||||| |||| Sbjct 46333 CGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCA 46274 Query 31335 AACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTC 31394 | ||| | |||||| | || | || || ||||| || || || ||||| |||| Sbjct 46273 AGCAGCTCGAAGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTTC 46214 Query 31395 ATCTGGTACTTAGACTGAGGGGCGG 31419 | || || || ||||| | || || Sbjct 46213 ACCTTGTTCTCCGACTGCGTGGTGG 46189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766093535600