Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq18 120 4e-22 seq14 118 1e-21 >seq18 Length=823183 Score = 120 bits (132), Expect = 4e-22 Identities = 171/240 (71%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || || || ||| ||| ||||||||||| | || | ||||| || || || Sbjct 29453 CAAGCACGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGT 29512 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||| |||||||| ||||| ||||| || ||||| || || || ||||| || ||||| || Sbjct 29513 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGGCGAACGAGCCGGAGAA 29572 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTC 33754 |||||| || || || || |||||||| || || | ||| | | || || |||| Sbjct 29573 GAAGATGCCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCGAACGTGGAGCGCGTGTC 29632 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 |||||||| ||||||| |||||||||| | | || || || || || ||||| Sbjct 29633 GGTGATCCACTTGAGAGCCCATGCGGCCTTCTTCTGGATGCACGGGATGGTGTCGATGGC 29692 >seq14 Length=977059 Score = 118 bits (130), Expect = 1e-21 Identities = 424/658 (64%), Gaps = 4/658 (1%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | || ||| || ||||| ||| || || ||||| ||||| || | ||| Sbjct 768388 GGGCACATGAGCGTCCAGTCGCCGTCGGCCTCGACGCGCTTCATGAAGAGGTCCGAGATC 768329 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || || || || || || | | | |||||| || || ||||| | || Sbjct 768328 CAGAGGGCGTAGAACAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGGTTCTTCCTGAGG 768269 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 |||||||| | | || || | ||||| || || | ||| || || | | || || Sbjct 768268 TCGAGGAAGTCGAAGATGTCGGCGTGCCAAGGCTCGAGGTAGATCGCAAAGGCACCGGGA 768209 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || ||||| || | ||| | || ||| | || | | | ||| || Sbjct 768208 CGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGGCGTCGTACGCGCGGAGCATCGGG 768149 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | |||||||| || ||| |||||||||| ||| ||| || |||| || || || Sbjct 768148 ACGATACCGTTCGAGTAACCGTTGGTACCGGCGATGTAGGAGCCCTTGGCGCGGATGTTG 768089 Query 63534 CTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CG 63591 || ||| ||||| || || || || | || ||||| ||||| ||| || | || Sbjct 768088 TGGATGTGA-AGACCGATACCACCGGCGGTCTTTGAGATCTGAGCGCA-CGTCTTGAGCG 768031 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651 | || ||||| || || || || || ||||| | || || || ||||| | Sbjct 768030 TCTCGTAGATCCCGTCAATCGAGTCGTCCCTCATGGCGACGAGGAAGCACGACGACATCT 767971 Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711 || | | || || || || || | || || || ||||| || || || || | Sbjct 767970 GGGGGTTGGGCGTGCCGGCGTTGAAGAGCGTGGGCGAGGCGTGAGTGAAGTATCGCTCCG 767911 Query 63712 AAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGA 63771 | | || ||||||||||| || | ||| || | || || || || || |||| Sbjct 767910 ACATGAGGTTGTACGTCTCGATGACCTTGTCGATGTTGGATCCGTGGATACCGACGGCGA 767851 Query 63772 CACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGG 63831 ||||||| | ||||||||| |||| || ||||| ||| ||| || | | ||| | Sbjct 767850 CACGCATGATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGATGCGGAGGAGGTACG 767791 Query 63832 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | || | || || || ||||| |||||||| | |||||| || ||||| || || Sbjct 767790 ACCGCTCGAGCGTCTTGAAGCCAAAGTAGTTGTACGCAAAGTCGCGGTCGTAGATGAT 767733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817167000400