Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq18 125 1e-23 seq14 100 4e-16 >seq18 Length=823183 Score = 125 bits (138), Expect = 1e-23 Identities = 172/240 (72%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 ||| || || || ||| ||| ||||||||||| | || || |||||||| || || Sbjct 29453 CAAGCACGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGT 29512 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 ||| |||||||| ||||| ||||| || ||||| || || || || || || || || || Sbjct 29513 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGGCGAACGAGCCGGAGAA 29572 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTC 50132 |||||| || || || ||||||||||| | || | ||| | | ||| || |||| Sbjct 29573 GAAGATGCCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCGAACGTGGAGCGCGTGTC 29632 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 |||||||| ||||||| |||||||||| | | || || || || || ||||| Sbjct 29633 GGTGATCCACTTGAGAGCCCATGCGGCCTTCTTCTGGATGCACGGGATGGTGTCGATGGC 29692 >seq14 Length=977059 Score = 100 bits (110), Expect = 4e-16 Identities = 429/673 (64%), Gaps = 4/673 (1%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || || || ||| | || ||||| | || ||| || || || ||| || || ||||| Sbjct 768403 CCGGGGCACTCGGCGGGGCACATGAGCGTCCAGTCGCCGTCGGCCTCGACGCGCTTCATG 768344 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 ||||| || | ||||| || || || || || | || | ||||| || || Sbjct 768343 AAGAGGTCCGAGATCCAGAGGGCGTAGAACAGGTCACGGGCGCGGACTTCCTCCTTGCCG 768284 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| | || |||||||| | | || || | ||||| || || | ||| || Sbjct 768283 TGGTTCTTCCTGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCCAAGGCTCGAGGTAGATC 768224 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | || || || ||||| || ||||| || | ||| | || ||| | || Sbjct 768223 GCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGGCGTCGTAC 768164 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 | | | ||| || | ||||| || || ||| ||||| |||| ||| ||| || Sbjct 768163 GCGCGGAGCATCGGGACGATACCGTTCGAGTAACCGTTGGTACCGGCGATGTAGGAGCCC 768104 Query 80191 CTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 80249 |||| || || || || ||| ||||| || || || || | || ||||| || Sbjct 768103 TTGGCGCGGATGTTGTGGATGTGA-AGACCGATACCACCGGCGGTCTTTGAGATCTGAGC 768045 Query 80250 GCATCGTTTTAA-CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 ||| ||| || | ||| || ||||| || || || || || ||||| | || | Sbjct 768044 GCA-CGTCTTGAGCGTCTCGTAGATCCCGTCAATCGAGTCGTCCCTCATGGCGACGAGGA 767986 Query 80309 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 80368 | || ||||| ||| | || || || || || | || || || ||||| | Sbjct 767985 AGCACGACGACATCTGGGGGTTGGGCGTGCCGGCGTTGAAGAGCGTGGGCGAGGCGTGAG 767926 Query 80369 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 80428 | || || || |||| || ||||||||||| || | || || | || | Sbjct 767925 TGAAGTATCGCTCCGACATGAGGTTGTACGTCTCGATGACCTTGTCGATGTTGGATCCGT 767866 Query 80429 GAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTA 80488 | || || || ||||||||||| | ||||||||| |||| || || |||||| || | Sbjct 767865 GGATACCGACGGCGACACGCATGATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGA 767806 Query 80489 TTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548 | | | ||| || || | || || || ||||| |||||||| | |||||| | Sbjct 767805 TGCGGAGGAGGTACGACCGCTCGAGCGTCTTGAAGCCAAAGTAGTTGTACGCAAAGTCGC 767746 Query 80549 GTTCGTAAATAAT 80561 | ||||| || || Sbjct 767745 GGTCGTAGATGAT 767733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268306190200