Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq14 143 4e-29 seq18 109 8e-19 >seq14 Length=977059 Score = 143 bits (158), Expect = 4e-29 Identities = 348/514 (68%), Gaps = 16/514 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | || ||||| | || ||||||||||| ||| Sbjct 768192 CAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCGATCTACCTCGAGCCTTGGCACGCCGAC 768251 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 | || ||||| |||| | | || ||| ||| || || | || ||| | ||| Sbjct 768252 ATCTTCGACTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAAGTCCGCGCCCGTGAC 768311 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| || || |||||| | | || | ||||||||||||||| | | || ||| || Sbjct 768312 CTGTTCTACGCCCTCTGGATCTCGGACCTCTTCATGAAGCGCGTCGAGGCCGACGGCGAC 768371 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGA-TTGCTGGGGCGAAGAGTT 97114 |||| || |||||||||| | || ||||| || |||| ||| ||||| |||| Sbjct 768372 TGGACGCTCATGTGCCCCGCCGAGTGCCCCGGCCTCGCCGACGTGC-ACGGCGACCAGTT 768430 Query 97115 TGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATG 97170 |||| ||| ||| | ||||||||| | ||| | || |||||| || | | Sbjct 768431 TGAG---AAGCTCTACGAGAGCTACGAGCAGGCCGGCAAGGGTCGCAAGACGA-TCAAGG 768486 Query 97171 CACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 | | |||| || ||| |||||| | ||| ||| ||||| || || | ||| Sbjct 768487 CGC-AGAAGCTCTGGTTTGCCATCCTCGAGGCCCAGACCGAGACCGGTGGCCCCTTCATG 768545 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAG--CAACCAACGCCACTTGGGCACCATCAAGG 97287 ||||||||||| ||| || ||||| || |||||| | ||| | |||||||||||| Sbjct 768546 CTCTACAAGGACGCCGCCAA-CGCAA-AGTCCAACCAGCAGCACCTCGGCACCATCAAGT 768603 Query 97288 GCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCG 97347 ||||| || ||||| || || | |||||| | | || |||||| || || ||| Sbjct 768604 CGTCCAACCTCTGCACCGAGATCATCGAGTACTCTGCCCCCGACGAGGTCGCCGTCTGCA 768663 Query 97348 TTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 || || ||| || || ||| |||||| || Sbjct 768664 ACCTCGCCTCGCTCGCCCTCCCCGCGTTTGTCGA 768697 >seq18 Length=823183 Score = 109 bits (120), Expect = 8e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472 ||| |||||| | || | || || |||||||| |||||||||||||| || || | Sbjct 29619 CGTTCGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGT 29560 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 | || | ||||| ||||||||||||||||| ||||||||||| || || | |||| Sbjct 29559 TCGCCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACG 29500 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || | || || || |||||||| || ||| |||||||| Sbjct 29499 AGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGC 29460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058690521800