Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq18 134 1e-26 seq5 105 6e-18 seq3 84.2 2e-11 >seq18 Length=823183 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | || | |||||||||||| || |||||||| ||| Sbjct 46981 CCACCGCGGAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 47040 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| | || | || ||||||||||||||| Sbjct 47041 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGTTGCTGGTCCGGAGGG 47100 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 47101 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCAACC 47160 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || ||||| ||||| || |||||||||||||| Sbjct 47161 TCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 47207 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | ||||||||||| || |||||||| |||||| Sbjct 45907 CCACCACGCAGACGGAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 45966 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | |||||| ||||||||||| ||| |||| | |||||| |||||||| ||| Sbjct 45967 AGGGTCCTTCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCCGGGGGG 46026 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || || | ||||||| Sbjct 46027 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCAGAAGACTCGACC 46086 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | || || ||||| Sbjct 46087 TCGAGGGTGATCGTCTTGCCGGT 46109 Score = 116 bits (128), Expect = 3e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || |||||| | | ||||| ||| ||||| | |||||||||| | || | | Sbjct 29680 ATCCCGTGCATCCAGAAGAAGGCCGCATGGGCTCTCAAGTGGATCACCGACACGCGCTCC 29621 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || |||||||||||| | | |||||||| || |||||| |||| || || ||| Sbjct 29620 ACGTTCGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCG 29561 Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 || ||| | ||||| | |||| | ||| ||||||||||||| || || |||| Sbjct 29560 TTCGCCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 29501 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTG 46307 ||||| || ||||| |||||||| || || || ||||||||||| Sbjct 29500 GAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCGTG 29457 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || | || | ||||||||||| || |||||||| || Sbjct 46189 CCACCACGCAGTCGGAGAACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 46248 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || ||||||||||| ||| |||| | ||||||||||||||| ||| Sbjct 46249 AGGGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 46308 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || || | ||||||| Sbjct 46309 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGACGACTCGACC 46368 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||||| ||| || || || Sbjct 46369 TCGAGGGTAATGGTCTTTCCCGT 46391 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| ||||| ||||| |||||||| ||| Sbjct 46753 CCACCACGGAGTCGGAGGACGAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAG 46812 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || ||||||||||| ||| | || | ||| || ||||| || ||| Sbjct 46813 AGGGTTCGGCCGTCTTCCAGCTGCTTGCCGGCGAAAATGAGACGTTGTTGGTCTGGCGGG 46872 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || |||| ||||||| Sbjct 46873 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCGACC 46932 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || || || || ||||| |||||||| Sbjct 46933 TCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 46979 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 |||||| |||||| ||||||||||| ||| |||| | ||||||||||||||||||||| Sbjct 47330 GGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGAT 47389 Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189 || || ||||| ||| || ||||| | || | || || | ||||||| || Sbjct 47390 GCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTC 47449 Query 131190 GACGGTAACGGTTTTACCGGTTAG 131213 || ||| | ||| || ||||| || Sbjct 47450 GAGGGTGATGGTCTTTCCGGTGAG 47473 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || | || | ||||||||||| || |||||||| || | Sbjct 46474 CCACCACGCAGTCGGAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 46533 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 46534 AAGGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCTGGCGGA 46593 Query 131128 ATTCCTTC 131135 || || || Sbjct 46594 ATGCCCTC 46601 >seq5 Length=1498571 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | || | |||||||||||| || |||||||| || Sbjct 692037 CCACCACGCAGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 692096 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| |||| | ||||| |||||||| ||| Sbjct 692097 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGG 692156 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 692157 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACC 692216 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 |||| ||| | || || || || || Sbjct 692217 TCGAGGGTGATCGTCTTGCCCGTAAG 692242 >seq3 Length=1717572 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| ||||||||||| ||| | || | |||||| |||||||| ||||| || || || Sbjct 192642 GTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCCGGGGGGATACCCTCCTT 192701 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| ||| ||||| | || | || || | |||||| | |||| ||| | Sbjct 192702 GTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTGAT 192761 Query 131199 GGTTTTACCGGTTAGA 131214 ||| || ||||| ||| Sbjct 192762 GGTCTTCCCGGTGAGA 192777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012475491200