Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq14 114 2e-20 seq18 107 2e-18 >seq14 Length=977059 Score = 114 bits (126), Expect = 2e-20 Identities = 434/676 (64%), Gaps = 4/676 (1%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || || | || ||||| | || ||| || ||||| ||| || || ||| Sbjct 768406 AGGCCGGGGCACTCGGCGGGGCACATGAGCGTCCAGTCGCCGTCGGCCTCGACGCGCTTC 768347 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || ||||| || | ||||| || || || || || | || | |||||| || Sbjct 768346 ATGAAGAGGTCCGAGATCCAGAGGGCGTAGAACAGGTCACGGGCGCGGACTTCCTCCTTG 768287 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| | || |||||||| | | || || | ||||| || || | ||| Sbjct 768286 CCGTGGTTCTTCCTGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCCAAGGCTCGAGGTAG 768227 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 || || | | || || || ||||| || ||||| || | ||| | || ||| | Sbjct 768226 ATCGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGGCGTCG 768167 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 || | | | ||| || | ||||| || || ||| ||||| || | ||| ||| Sbjct 768166 TACGCGCGGAGCATCGGGACGATACCGTTCGAGTAACCGTTGGTACCGGCGATGTAGGAG 768107 Query 63320 CCACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378 || |||| || || || || ||| ||||| || || || || | || ||||| Sbjct 768106 CCCTTGGCGCGGATGTTGTGGATGTGA-AGACCGATACCACCGGCGGTCTTTGAGATCTG 768048 Query 63379 TGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 ||||| ||| || | ||| || ||||| || || || || ||| ||||| | | Sbjct 768047 AGCGCA-CGTCTTGAGCGTCTCGTAGATCCCGTCAATCGAGTCGTCCCTCATGGCGACGA 767989 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 | || || ||||| ||| | || || || || || | || || || |||| Sbjct 767988 GGAAGCACGACGACATCTGGGGGTTGGGCGTGCCGGCGTTGAAGAGCGTGGGCGAGGCGT 767929 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63557 |||| || || || || | || ||||||||||| || | ||| || | || Sbjct 767928 GAGTGAAGTATCGCTCCGACATGAGGTTGTACGTCTCGATGACCTTGTCGATGTTGGATC 767869 Query 63558 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63617 || || || || ||||||||||| | ||||||||| |||| || || |||||| || Sbjct 767868 CGTGGATACCGACGGCGACACGCATGATCATGTGCTGGGGTCGCTCGACAATCTTGCCGT 767809 Query 63618 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63677 | || | | ||| || || | || || || ||||| |||||||| | ||||| Sbjct 767808 TGATGCGGAGGAGGTACGACCGCTCGAGCGTCTTGAAGCCAAAGTAGTTGTACGCAAAGT 767749 Query 63678 CTCGTTCGTAAATAAT 63693 | || ||||| || || Sbjct 767748 CGCGGTCGTAGATGAT 767733 >seq18 Length=823183 Score = 107 bits (118), Expect = 2e-18 Identities = 152/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| || || || ||| ||| ||||||||||| | || | |||||||| || || Sbjct 29453 CAAGCACGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGT 29512 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776 ||| |||||||| ||||| ||||| || ||||| || || || || || || || || || Sbjct 29513 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGGCGAACGAGCCGGAGAA 29572 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTC 32833 ||| || || || || || |||||||| || || | ||| | | || || |||| Sbjct 29573 GAAGATGCCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCGAACGTGGAGCGCGTGTC 29632 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 |||||||| ||||||| |||||||||| Sbjct 29633 GGTGATCCACTTGAGAGCCCATGCGGCCTTCTT 29665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631564378000