Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq18 122 7e-23 seq5 98.7 8e-16 seq3 84.2 2e-11 >seq18 Length=823183 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | ||||| || || ||||||| || || || | | Sbjct 47207 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCGTCG 47148 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || |||||||||||||| || || || || Sbjct 47147 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 47088 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || |||||||| ||| | |||||| ||||||| ||||||| |||||| Sbjct 47087 CAACGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 47028 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | || | ||| | || | ||||| || Sbjct 47027 ATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGTCTCCGCGGTGG 46981 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| || || || || | || Sbjct 46979 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCC 46920 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || ||||||||||| || || || || ||| Sbjct 46919 GACACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAA 46860 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || |||||||| ||| | || || ||| ||| ||||||| |||||| Sbjct 46859 CAACGTCTCATTTTCGCCGGCAAGCAGCTGGAAGACGGCCGAACCCTCTCCGACTACAAC 46800 Query 22399 ATTCAAAAAGAATCCACC 22416 || |||||||| |||||| Sbjct 46799 ATCCAAAAAGAGTCCACC 46782 >seq5 Length=1498571 Score = 98.7 bits (108), Expect = 8e-16 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || ||| |||| || || ||||| | |||| ||| | ||| || |||| Sbjct 692239 ACGGGCAAGACGATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAGGCC 692180 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| || || || ||||| || || || || || ||||| Sbjct 692179 AAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGCCTGATCTTCGCGGGCAAG 692120 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||| ||| |||| || |||||||| || || || || ||| Sbjct 692119 CAGCTCGAGGACGGCCGAACCCTCTCGGACTACAACATCCAGAAGGAGTCGACC 692066 >seq3 Length=1717572 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || ||||| || | || ||| | ||| | |||| Sbjct 192773 ACCGGGAAGACCATCACCCTCGAGGTGGAGTCCTCGGACACCATCGACAACGTCAAGGCG 192714 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| || || || ||||| ||||| || || |||||||| Sbjct 192713 AAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGTCTCATTTTCGCCGGCAAG 192654 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 ||| | ||||| ||| ||| | || || |||| Sbjct 192653 CAGCTCGAGGACGGCCGTACCCTTTCGGACTACA 192620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727718651075