Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5 114 3e-20 seq3 109 1e-18 seq14 105 1e-17 seq18 98.7 2e-15 >seq5 Length=1498571 Score = 114 bits (126), Expect = 3e-20 Identities = 136/182 (75%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| | || ||||| ||||| |||| | || || ||||||||| || || Sbjct 1209618 GGTCCCAACGGTTCCGGAAAGTCGACCCTCGTCAAGCTGCTCACCGGCGAGACCGAGCCC 1209559 Query 280239 ACTGAGGG--GT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | |||| || || | |||||||| |||||| || || | ||||||||| |||||| Sbjct 1209558 AACAAGGGCGGTACCATCTGGAAGCACCCCAACTTGGTCATTGGTTACGTCGCCCAGCAC 1209499 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 || |||||||||||||| |||||||| ||| ||| || | | ||||| | ||||| Sbjct 1209498 GCCTTCCACCACATCGACAACCACCTCGACTCGACCCCGCTCGAGTACATGCTCTGGCGT 1209439 Query 280356 TA 280357 || Sbjct 1209438 TA 1209437 Score = 96.9 bits (106), Expect = 7e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || || ||||| |||||||||||||||||||| ||| |||| ||||| || | Sbjct 1210101 GGCTCGCTCTCGGGCGGTTGGAAGATGAAGCTGGCTCTCGCTCGTGCCATCCTGTTCAAG 1210042 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| | || || || || ||||| |||||||| | ||| | |||||| | |||| Sbjct 1210041 GCCGACATTCTCCTCCTCGACGAGCCCACCAACCATCTCGACGTCCTCAACGTCGACTGG 1209982 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | |||||| ||| || | | | || |||||||||| ||||||||| Sbjct 1209981 CTCATCAACTACCTCACCTCGCTCACCACCTGCACGTCGATCATTGTCTCGCACGACTCT 1209922 Query 279879 GGCTTCCT 279886 | |||||| Sbjct 1209921 GACTTCCT 1209914 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || || ||||||||||| | ||| |||| || || |||| | Sbjct 1209016 ATGCGCGGTCTGTCCGGTGGACAGAAGGTCAAGGTCGTCCTCGGTGCCGCCACCTGGCGA 1208957 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823 | || ||| | ||| |||||||||||| |||||||| || ||||||||| Sbjct 1208956 CGACCCCACATCATCTGTCTCGACGAGCCCACCAACTACCTCGACCGCGAG 1208906 >seq3 Length=1717572 Score = 109 bits (120), Expect = 1e-18 Identities = 424/653 (65%), Gaps = 54/653 (8%) Strand=Plus/Minus Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765 |||| ||||| |||||||||||||| | || | |||||||| || | | || || Sbjct 1099838 TGTCCGGTGGATGGAAGATGAAGCTCGAGCTTGCCCGCGCCATGCTCATCGGCGCTGACA 1099779 Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGT 279825 |||| || || || ||||| || |||||| | ||| | | ||| | |||||| | | Sbjct 1099778 TCCTCCTCCTCGACGAGCCGACTAACCACCTCGACGTCCAGACCGTCGGCTGGCTCGAGC 1099719 Query 279826 CCTACCTA----ACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGC 279881 ||||| ||| ||| || || | | | |||||| ||||| ||||||||||| Sbjct 1099718 AGTACCTGTGCGACCTGTCCGA-GA---TCACGTGCCTCATCGTCTCGCACGACTCTGGT 1099663 Query 279882 TTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAG 279941 ||||| || || ||| | | |||||| ||||| ||| | || |||| | | | Sbjct 1099662 TTCCTCGACAATGTCTGCACCGACATCATGCACTACGAGGACAA---GAAGATTGTCTAC 1099606 Query 279942 CACATCGGCAACCTGTCTGCTTTCGTGGC-AAAGCGCCCTGAGGCGGCCG---CCTACTA 279997 || |||||||||||| || |||| |||| |||| ||||| ||||||| Sbjct 1099605 TACCCCGGCAACCTGTCCAAGTTTGTGGAGAAAGTCCCCT----CGGCCAAATCCTACTA 1099550 Query 279998 TGACCTGAAGGACGCCACCGC---CAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGG 280054 ||| | ||| ||| | ||||| ||||| || || | || ||| Sbjct 1099549 CACCCTC---GCCGCGACCTCGGTCAAGTTCTCGTTCCCCCCTCCGGGCTCGCTCATGGG 1099493 Query 280055 CATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCA- 280113 | || ||||| || || |||||||||||| | | | || | || || Sbjct 1099492 CGTCCGGTCAAACACCCGAGCCATCATGAAGCTCAACAACTGCACGTTCACCTACCCTGG 1099433 Query 280114 -ATG----GCCCC------AACATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTC 280162 ||| ||||| || | | || |||||| ||| || || ||| Sbjct 1099432 CATGTCTCGCCCCTCGCTGAAAAACGTCTC--GTGTCACCTC-------TCCCTGTCCTC 1099382 Query 280163 ACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGAC 280222 || | || || | || |||||||| || || ||||| ||||||||||| ||||||| Sbjct 1099381 CCGCGTGGGGATCGTGGGGCCCAATGGAGCTGGCAAGTCAACCCTAATCAAGCTCCTGAC 1099322 Query 280223 TGGCGAGACCCAGG--CCACT-GAGGGGTCCGTTTGGAAGCATCCCAACA-TGCGGATGG 280278 |||||||| || || | ||||| |||| ||||| ||| || | || ||| Sbjct 1099321 GGGCGAGAC---GGTTCCGCAAGAGGGCACCGTGCACAAGCA-CCCGGCACTCCGTGTGG 1099266 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331 ||||||||| |||||||| |||||||||||| | |||||||||| |||| Sbjct 1099265 GTTACGTCGCCCAGCACGCGTTCCACCACATCAACCTGCACCTGGACAAGACT 1099213 Score = 104 bits (114), Expect = 5e-17 Identities = 195/284 (69%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 218528 ACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGG 218587 ||||||||||||| || ||||| | || || || |||||| ||| | | Sbjct 32123 ACAAGGAGCTCATCCTCTTCTCCATGGCCGACAACATCCGATCCATTCCCTCCGTTGCCG 32182 Query 218588 ATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTC 218647 |||| || || || || || ||| || | |||| |||||||| ||||| Sbjct 32183 ATGGACTGAAACCTGGTCAACGAAAGGTCTTGTTTGGTTGTTTCAAGCGCAACCTCACCA 32242 Query 218648 AAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACG 218707 | || || || || || ||| | |||||||||| || || | | | |||||| |||| Sbjct 32243 AGGAGATCAAAGTGGCACAGCTGGCTGGTTATGTGTCGGAGAAGACGGCCTACCACCACG 32302 Query 218708 GTGAGCAGAGTCTGCAGGGTG-CCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAAC 218766 | |||||| || || || | | ||||| || |||| ||| || |||||| || ||| Sbjct 32303 GCGAGCAGTCCCT-CACGGCGACGATTGTGGGTTTGGCGCAGAGCTTTGTGGGAAGCAAC 32361 Query 218767 AACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 ||||| |||||||| || |||||||| |||||| ||||||| Sbjct 32362 AACATCAACTTGCTCGCACCTAACGGTCAATTTGGTACTCGTCT 32405 >seq14 Length=977059 Score = 105 bits (116), Expect = 1e-17 Identities = 413/639 (65%), Gaps = 19/639 (3%) Strand=Plus/Minus Query 293120 TCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAGATCT 293179 |||| |||| |||||||||||| || || ||||||||||| || | ||| || |||| Sbjct 769446 TCTGGTCGATAAAGGCACCACGGTCCGCGGCGAGGTCAATGACCGCCTTTTGGGAAATCT 769387 Query 293180 CCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTGGATAG 293239 |||| |||||||| | ||||||| || | | |||| ||| |||||||| | Sbjct 769386 CCCAGACCGTCTTGTAGATCGCCTTGAGCTCTGCGGGGATGCTCGGAACGTTCTGGATCG 769327 Query 293240 ACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAGCAATG 293298 | || || ||| || || |||||||||| ||||| ||| || || | | ||| Sbjct 769326 AGCCGCCCGCGGCGATGATGAGGTTCTTCATGTTCTCGTCCCAGAGACCGA-GGTTGATG 769268 Query 293299 AGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTG 293358 || ||||||| | | | | || || |||| ||||||| ||| || ||| | Sbjct 769267 AGATCGCGGAGCAACCAGGGGCAAACGACCTGGAAGTCACCAGAGAGCACACGGCGGGCG 769208 Query 293359 TAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGTAGAT 293418 || | |||| ||| ||| ||| ||| ||||| ||||| | || || Sbjct 769207 TACAGCATCGAGGTGTAGGGCTCGAAGCACTCGTTCCACCCGAGGATCTGCGAGGTCGAG 769148 Query 293419 GCGGTAGGCATAAGAGCAGTCG-TCAGAGAGTTCCTCACACC---CTTCTTGA----CAC 293470 ||||| ||||| | || | || || ||||| | ||||| || ||||| | | Sbjct 769147 GCGGTGGGCATCGGCGC-GACGAGGAGCGAGTTGCGGACACCGTGCTGCTTGATGTTCTC 769089 Query 293471 GCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGAGGTGTAAC-ACCCCAGAGATGATA 293528 ||| |||| ||||||| |||||| ||| | | | | ||||| || | Sbjct 769088 GCG----GAGAGGAGCCCAGTCCCAGAG--GTCGGTCGGGACGCGGCCCCACAGGTCGGG 769035 Query 293529 CTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATC 293588 ||| | || ||||||| | || || ||||| |||| | |||| ||| | Sbjct 769034 CTGGAGGAGACCCTTGGAGATGGGCGAGCCCTCGTAGGTCTCGTACTTGCCAAACTCCTG 768975 Query 293589 AGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTT 293648 | ||||||||| || ||||| | ||| || ||| || ||||||||||| ||| Sbjct 768974 GGCGAGCTCGCACGACGCCTCGAGAGCGGCGTGGTAGATCGTCTCGAAGATCTGGATGTT 768915 Query 293649 GAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAG 293708 ||||| ||| || ||||| |||||||| ||| | || |||| || Sbjct 768914 GAGCTCGCGGGCGGCGGGCGAGTCGAACGGCATGCGCAGAGCCATAAAGGCATCGGCGAG 768855 Query 293709 ACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTT 293747 |||||| ||||| | || || ||||| ||||| |||| Sbjct 768854 ACCCTGGACACCGAGGCCGACAGGGCGGTGACGCATGTT 768816 >seq18 Length=823183 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | ||||||||||||||||||||| ||| Sbjct 29064 TCGAAGAAGTTCGCCTTGCCCTGGAGCGAGATCATCTCCATGAAGTCGAAGGGGTTGGTG 29123 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || || | |||| | ||| || || |||| | ||||| || |||||||| | Sbjct 29124 GCGTTCCAGATCTTGTCGTTGCCGAGGGCGACGAGCAGACGGTCGGCGACAAACTCGATG 29183 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || || | ||| || | ||||||||||| || Sbjct 29184 TATTGGCACATGAGCTTGGAGTTCATGCCGAT 29215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836075696255