Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq14 535 8e-147 seq18 221 2e-52 >seq14 Length=977059 Score = 535 bits (592), Expect = 8e-147 Identities = 1191/1780 (67%), Gaps = 73/1780 (4%) Strand=Plus/Minus Query 243884 GACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGA 243943 |||| |||||||||| |||| | || || ||||| | | |||| |||| || Sbjct 769453 GACTCACTCTGGTCGATAAAGGCACCACGGTCCGCGGCGAGGTCAATGACCGCCTTTTGG 769394 Query 243944 GATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCG--ATGT 244001 || ||||| | ||||||||||||| | |||||| | |||||| | ||| | || Sbjct 769393 GAAATCTCCCAGACCGTCTTGTAGATCGCCTTGAGCTCTGCGGGGATGC--TCGGAACGT 769336 Query 244002 TCTGCACCGAGCC-CTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCC 244060 |||| | |||||| | | || |||||| || | |||||| |||| ||| || || Sbjct 769335 TCTGGATCGAGCCGCCCGCGG-CGATGATGAGGTTCTTCATGTTCTCGTCCCAGAGACCG 769277 Query 244061 AAGC------GCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGAC 244114 | | | || ||| | |||||| || || ||||| || || || || Sbjct 769276 AGGTTGATGAGATC--GCGGAGCAACCAGGGGCAA----ACGACCTGGAAGTCACCAGAG 769223 Query 244115 AGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGT 244174 ||||| ||||| ||| || | | || ||||||| || ||| | || || Sbjct 769222 AGCACACGGCGGGCGTACAGCATCGAGGTGTAGGGCTCGAAGCACTCGTTCCACCCGAGG 769163 Query 244175 ATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGC 244234 ||||||| || || || ||||| |||| || || || ||| | || |||||| Sbjct 769162 ATCTGCGAGGTCGAGGCGGTGGGCATCGGCGCGACGAGGAGCGAGTTGCGGACACCGTGC 769103 Query 244235 CTCTGGATG------CGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCC-TC 244287 || |||| ||||| |||| ||||||||| |||||| || Sbjct 769102 TGCTTGATGTTCTCGCGGAGAG-GAGC-----CCAGTCCCA---------GAGGTCGGTC 769058 Query 244288 GCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTA 244347 | | | ||||||||| ||| ||| || || |||||| || ||| ||||||||| Sbjct 769057 GGGAC-GCGGCCCCACAGGTCGGGCTGGAGGAGACCCTTGGAGATGGGCGAGCCCTCGTA 768999 Query 244348 GGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTA 244407 |||| ||| || |||||| |||| || | | ||||| ||||||| ||| Sbjct 768998 GGTCTCGTACTTGCCAAACTCCTGGGCGAGCTCGCACGACGCCTCGAGAGCGGCGTGGTA 768939 Query 244408 GATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCC 244467 ||| |||||||||||| |||| | |||||||| | || ||| || |||| Sbjct 768938 GATCGTCTCGAAGATCTGGATGTTGAGCTCGCGGGCGGCGGGCGAGTCGAACGGCATGCG 768879 Query 244468 CATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTT 244527 || ||| ||| | ||||| || ||||| || |||| ||||| || | ||| ||| | Sbjct 768878 CAGAGCCATAAAGGCATCGGCGAGACCCTGGACACCGAGGCCGACAGGGCGGTGACGCAT 768819 Query 244528 GTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTT 244587 ||| ||| ||| || || ||||| |||||| | ||| ||| ||| |||||| Sbjct 768818 GTTCGAGTTGCGGGCCTCCTTGACAGGGTAGTAGTTGCGGGTGATGACCGTGTCGAGGTT 768759 Query 244588 GCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTC 244647 ||||| | || ||| ||| || |||||||| | | | ||| Sbjct 768758 CTTGGTGACGACCTTTGTGATCTCGTGGAGCTTCTTGAAGTCGTAGACCCTGCGCTCCAT 768699 Query 244648 GGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCAC 244707 | ||| ||||| || |||||||| ||| |||||||||||||| || Sbjct 768698 GTCGA------------CAAACGCGGGGAGGGCGAGCGAGGCGAGGTTGCAGACGGCGAC 768651 Query 244708 CTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCC 244767 ||| || | | | ||||| || ||||||||||||||||| ||||||||||||| Sbjct 768650 CTCGTCGGGGGCAGAGTACTCGATGATCTCGGTGCAGAGGTTGGACGACTTGATGGTGCC 768591 Query 244768 CAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCC 244827 |||||||| || |||||||| |||||| |||||||||||||||||||||||| || || Sbjct 768590 GAGGTGCTGCTGGTTGGACTTTGCGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACC 768531 Query 244828 GGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCG 244887 ||||||| |||||| |||||| | |||||| | | ||||||| |||| |||| Sbjct 768530 GGTCTCGGTCTGGGCCTCGAGGATGGCAAACCAGAGCTTCTGCGCCTTGATCGTCTTGCG 768471 Query 244888 AGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTC 244947 | ||||||| | |||||||| ||| || ||| |||| | ||| || || Sbjct 768470 ACCCTTGCCGGCCTGCTCGTAGCTCTCGTAGAGCTTCTCAAACTGGTCGCCGTGCACGTC 768411 Query 244948 GTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCT 245007 | | |||||||||||| || ||||||||||| |||| |||||| || ||| ||| | Sbjct 768410 GGCGAGGCCGGGGCACTCGGCGGGGCACATGAGCGTCCAGTCGCCGTCGGCCTCGACGCG 768351 Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || |||||||||||| | |||||||||||| | ||| ||||| | || | || || Sbjct 768350 CTTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAACAGGTCACGGGCGCGGACTTCCTC 768291 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | ||| ||||||||| || || | ||||| |||| |||| ||||||| ||||| | Sbjct 768290 CTTGCCGTGGTTCTTCCTGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCCAAGGCTCGAG 768231 Query 245128 GTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC-- 245185 ||||| || | ||| ||||| ||||||||||| |||||||| | | | || || Sbjct 768230 GTAGATCGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGA----CGTAGCGGGCAG 768175 Query 245186 --GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGA 245243 |||| | | ||| || | || || || ||||| |||| |||||||| || || Sbjct 768174 TGGCGTCGTACGCGCGGAGCATCGGGACGATACCGTTCGAGTAACCGTTGGTACCGGCGA 768115 Query 245244 TGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGG 245303 |||||| ||||||| | | || |||| |||| | || | || |||||| ||| | Sbjct 768114 TGTAGGAGCCCTTGGCGCGGATGTTGTGGATGTGAAGACCGATACCACCGGCGGTCTTTG 768055 Query 245304 AGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGT 245363 |||| | ||||| |||||| || || || || || || ||| | ||||| Sbjct 768054 AGATCTGAGCGCACGTCTTGAGCGTCTCGTAGATCCCGTCAATCGAGTCGTCCCTCATGG 767995 Query 245364 TGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGC 245423 || || ||||| || |||| |||||| ||||| ||| | |||||| || ||||| Sbjct 767994 CGACGAGGAAGCACGACGACATCTGGGGGTTGGGCGTGCCGGCGTTGAAGAGCGTGGGCG 767935 Query 245424 TGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGT 245483 |||||| || ||||| || ||| | || |||||||| || | |||||||| Sbjct 767934 AGGCGTGAGTGAAGTATCGCTCCGACATGAGGTTGTACGTCTCGATGACCTTGTCGATGT 767875 Query 245484 TGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTC 245543 || |||||||| | |||| | ||||| |||||||||| ||||| | Sbjct 767874 TGGATCCGTGGATACCGACGGCGACACGCATGATCATGTGCTGGGGTCGCTCGA-----C 767820 Query 245544 CCTCGGGTCCCTT------GAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACG 245597 || | || || ||| | ||| || ||||||||||||||||| |||||||| Sbjct 767819 AATCTTG-CCGTTGATGCGGAGGAGGTACGACCGCTCGAGCGTCTTGAAGCCAAAGTAGT 767761 Query 245598 AGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAG 245637 ||| |||||||| || || ||| ||| |||||| Sbjct 767760 TGTACGCAAAGTCGCGGTCGTAGATGATGGCACTGTCGAG 767721 >seq18 Length=823183 Score = 221 bits (244), Expect = 2e-52 Identities = 309/423 (73%), Gaps = 23/423 (5%) Strand=Plus/Minus Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGAT----CC 42592 |||||| | ||||| ||| ||| || || || ||||||||||| ||| || Sbjct 29773 GAGAACATCCACTCCGAGACTTACTCCCTCCTCATCGACACGTACATCAAGGACGCCGCC 29714 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 || ||| |||| | ||||| ||||||| || || || || |||||| |||||||||| Sbjct 29713 CGCCGATCGTACC----TGTTCGAGGCCATCGACACCATCCCGTGCATCCAGAAGAAGGC 29658 Query 42653 GGACTGGGCGCTCAACTGGATCGA-GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAG 42711 | ||||| ||||| |||||| || | || | | ||||||| |||| | || | | Sbjct 29657 CGCATGGGCTCTCAAGTGGATCACCGACACGCG-CTCCACGTTCGCCGAGCGTCTCATCG 29599 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 ||||| ||||||||||||||||||||||||| ||| | |||||||| ||||||||||||| Sbjct 29598 CCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCTGGCTCA 29539 Query 42772 AGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || || || || |||||||| ||||||||||| ||||| |||||| | |||||| Sbjct 29538 AGAAGCGCGGCCTC-ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGTGACGAG 29480 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTC- 42889 || || || | |||||||| ||| | || ||| | ||||||| || ||| |||| Sbjct 29479 GGTCTCCACACCGACTTTGCGTGCTTGCTCTTC---ACCCACCTC-CGCCGAAGGCCTCA 29424 Query 42890 GAAGGAGCGGGTCCGGGCC---ATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT 42946 ||| | || ||| |||||| ||||| || |||| ||| |||||||||| Sbjct 29423 CCCGGACACGATC---GCCAAGATCATCCGCGAGGCGGTCAAGATTGAGCAGGAGTTCCT 29367 Query 42947 CAC 42949 ||| Sbjct 29366 CAC 29364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338550766800