Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq18 161 2e-34 seq5 93.3 1e-13 seq3 84.2 5e-11 >seq18 Length=823183 Score = 161 bits (178), Expect = 2e-34 Identities = 175/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || ||||| || | ||| ||||||||||| || ||||||| | Sbjct 46753 CCACCACGGAGTCGGAGGACGAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAG 46812 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || |||||||| | || || || ||||| || ||||| ||||| ||| Sbjct 46813 AGGGTTCGGCCGTCTTCCAGCTGCTTGCCGGCGAAAATGAGACGTTGTTG---GTCTGGC 46869 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| ||||| || || || || || | ||| ||| || Sbjct 46870 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCGGACGACTCG 46929 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||||||||||||||| || || || ||||||||||| ||||||||| Sbjct 46930 ACCTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATT 46980 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | ||| ||||| || | || || || ||||| || ||||||| Sbjct 46980 TCCACCGCGGAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 47039 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || || || | || || || ||||| ||||| || || || || Sbjct 47040 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGTTGCTGGTCCGGAGG 47099 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || |||||||| || || || ||||| || || | || ||| || || Sbjct 47100 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCAAC 47159 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| |||||||||||||||||||| |||||||| Sbjct 47160 CTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 47207 Score = 107 bits (118), Expect = 5e-18 Identities = 154/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 288236 TTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATAT 288295 ||| ||| || ||||| || || | || ||||| || | ||| || || ||||| | Sbjct 45897 TTCCTAC-TGACCACCACGCAGACGGAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGT 45955 Query 288296 TATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTT 288355 | |||||| || || | |||||| || | || || || ||||||||||||||||||| Sbjct 45956 TGTAGTCGCTCAGGGTCCTTCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTT 46015 Query 288356 GAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGC 288415 | ||||| || || || |||||||| ||||| || || || || || | || Sbjct 46016 GGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCAG 46075 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 || || || ||||| ||||||||||| ||||||| Sbjct 46076 AAGACTCGACCTCGAGGGTGATCGTCTTGCCGGTCA 46111 Score = 100 bits (110), Expect = 7e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 || |||||||| ||||| |||||||| || || | ||| |||||| || ||||| ||| Sbjct 46654 TTGTCCTGGATCTTCGCCTTCACGTTGTCAATCGTGTCGGACGATTCAACCTCGAGGGTG 46713 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||| || ||||||||||| |||||||| Sbjct 46714 ATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 46751 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 ||||| | || ||||| ||||| || | || || || ||||||||||||||||| || Sbjct 47319 TAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGG 47378 Query 288358 GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 ||||| || || || |||||||| || || || ||||| || || | || Sbjct 47379 TCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAA 47438 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || |||||||| ||||| ||||| ||||| || Sbjct 47439 GACTCGACTTCGAGGGTGATGGTCTTTCCGGTGAG 47473 >seq5 Length=1498571 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | || || || ||||| || ||||| | | Sbjct 692037 CCACCACGCAGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 692096 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || ||||||||||| |||||||| ||| Sbjct 692097 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGG 692156 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || || || || || | ||| || || || Sbjct 692157 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACC 692216 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||| ||||||||||| || || || Sbjct 692217 TCGAGGGTGATCGTCTTGCCCGTAAG 692242 >seq3 Length=1717572 Score = 84.2 bits (92), Expect = 5e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 ||||| | || || || ||||| || | || || || ||||| || ||||||||||| Sbjct 192622 TAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGG 192681 Query 288358 GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 ||||| || || || |||||||| ||||| || ||||| || || | || Sbjct 192682 TCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAG 192741 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| ||||| ||||||||||| ||| Sbjct 192742 GACTCCACCTCGAGGGTGATGGTCTTCCCGGTGAGA 192777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653568712290