Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq14 250 3e-61 seq18 145 9e-30 seq1 96.9 4e-15 seq3 95.1 1e-14 >seq14 Length=977059 Score = 250 bits (276), Expect = 3e-61 Identities = 897/1385 (65%), Gaps = 37/1385 (3%) Strand=Plus/Minus Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||| ||||| |||||||| || || | ||| || | ||| ||||| |||||||| Sbjct 769195 GTGTAGGGCTCGAAGCACTCGTTCCACCCGAGGATCTGCGAGGTCGAGGCGGTGGGCATC 769136 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCC 114073 || || | ||| || ||| |||| ||| | | | | ||| || ||| | || Sbjct 769135 GGCGCGACGAGGAGCGAGTTGCGGACACCGTGCTGCTTGATGTTCTCGCGGAGAGGAGCC 769076 Query 114074 CAGTCGTAGTTGAGCTTTGTCTCCCCCTG---CCACATATCAAACTGGAGGATACCTTGG 114130 ||||| || || | ||| | | ||||| || |||||||| ||| | | Sbjct 769075 CAGTCCCAG---AGGTCGGTCGGGACGCGGCCCCACAGGTCGGGCTGGAGGAGACCCTTG 769019 Query 114131 GAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCC---GCCAATTCGGAG 114187 ||| ||||| ||||| | |||||||| ||| || |||| || | ||| | Sbjct 769018 GAGATGGGCGAGCCCTCGTAGGTCTCGTACTTGCC---AAACTCCTGGGCGAGCTCGCAC 768962 Query 114188 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCC 114247 ||||||||| || ||||| || || ||||| || || | || | | ||| Sbjct 768961 GACGCCTCGAGAGCGGCGTGGTAGATCGTCTCGAAGATCTGGATGTTGAGCTCGCGGGCG 768902 Query 114248 TCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACC 114306 || || || |||| | || || | ||||| |||| |||||||| |||||||| Sbjct 768901 GCGGGCGAGTCGAACGGCATGCG-CAGAGCCATAAAGGCATCGGCGAGACCCTGGACACC 768843 Query 114307 GAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATT 114366 |||||| | ||||| || | ||| || || || || || || || || || | || Sbjct 768842 GAGGCCGACAGGGCGGTGACGCATGTTCGAGTTGCGGGCCTCCTTGACAGGGTAGTAGTT 768783 Query 114367 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 114426 | ||| ||| | | || || |||||||| ||||||||||| || || ||||| | Sbjct 768782 GCGGGTGATGACCGTGTCGAGGTTCTTGGTGACGACCTTTGTGATCTCGTGGAGCTTCTT 768723 Query 114427 GTAATCAAAA---CTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 114483 | | || | ||||| ||| | |||| || || ||||||| || || || Sbjct 768722 GAAGTCGTAGACCCTGCG---CTCCATGTCGACAAACGCGGGGAGGGCGAGCGAGGCGAG 768666 Query 114484 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 114543 || || || | | ||| || ||| |||||| || || || || || | || || Sbjct 768665 GTTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTCGATGATCTCGGTGCAGAGGTTGGA 768606 Query 114544 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAG 114603 ||| |||||||| | || || || || ||||||| ||| || |||||||| || Sbjct 768605 CGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTTGCGTTGGCGGCGTCCTTGTAGAG 768546 Query 114604 CATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGG 114662 |||| | || || ||||| || |||| || ||| || || ||||| | || ||| Sbjct 768545 CATGAAGGGGCCACCGGTCTCGGTCTGGGCCTCGAGGATGGCAAACCAGAGCTTCTGCGC 768486 Query 114663 CTGGCACAG-TGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAAC 114721 || | | | ||| || ||| ||| |||||| | |||||| |||||| Sbjct 768485 CTTGATCGTCTTGCGACC-CTTGCCGG-CCTGCTCGTAGCTCTCGTAGAGCTTCTCAAAC 768428 Query 114722 TCTTCACC---CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 114778 | || || |||| || | ||| || || || | ||||| | ||| | ||| Sbjct 768427 TGGTCGCCGTGCACG---TCGGCGAGGCCGGGGCACTCGGCGGGGCACATGAGCGTCCAG 768371 Query 114779 TGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGA 114838 | || | |||| || ||||||||||||||||| | ||||||||| || |||| || Sbjct 768370 TCGCCGTCGGCCTCGACGCGCTTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAACAGG 768311 Query 114839 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 114898 || || ||| |||| || | || || || | | || | ||||| | ||| Sbjct 768310 TCACGGGCGCGGACTTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAAGTCGAAGATG 768251 Query 114899 TCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA---CCAGCCTGG 114955 || |||||||| || || ||||| | ||| | | || ||| ||| ||||| Sbjct 768250 TCGGCGTGCCAAGGCTCGAGGTAGATCGCAAAGGCACCGGGACGCTTGTTGCCACCCTGG 768191 Query 114956 TTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGG 115015 | || || | || ||||| | | |||| ||||| || | |||||| | || | Sbjct 768190 TCGACGTAGCGGGCAGTGGCGTCGTACGCGCGGAGCATCGGGACGATACCGTTCGAGTAA 768131 Query 115016 CCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAA 115073 || || || || ||| || ||| | | |||| | || | |||||||| | ||| | Sbjct 768130 CCGTTGGTACCGGCGATGTAGGAGCCCT--TGGCGCGGATGTTGTGGATGTGAAGACCGA 768073 Query 115074 TACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGA 115133 |||| || || ||||||||| || |||||| | |||| | ||||||||||||| | Sbjct 768072 TACCACCGGCGGTCTTTGAGATCTGAGCGCACGTCTTGAGCGTCTCGTAGATCCCGTCAA 768013 Query 115134 TCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAG 115193 ||||||| || | | |||| |||||||| |||||| || || | || || || | Sbjct 768012 TCGAGTCGTCCCTCATGGCGACGAGGAAGCACGACGACATCTGGGGGTTGGGCGTGCCGG 767953 Query 115194 CGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCT 115253 |||||||||| || || | ||||| |||| | | ||||| | ||| |||| Sbjct 767952 CGTTGAAGAGCGTGGGCGAGGCGTGAGTGAAGTATCGCTCCGACATGAGGTTGTACGTCT 767893 Query 115254 CCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATT 115313 | | ||| | |||| ||||| ||||||| | ||| ||||| | ||||| | Sbjct 767892 CGATGACCTTGTCGATGTTGGATCCGTGGATACCGACGGCGACACGCATGATCATGTGCT 767833 Query 115314 GGGGT 115318 ||||| Sbjct 767832 GGGGT 767828 >seq18 Length=823183 Score = 145 bits (160), Expect = 9e-30 Identities = 182/246 (74%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || |||||||||||||||||| |||||||| || || |||||| || || Sbjct 29460 GCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCG 29519 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| || |||||||| | |||||| |||| || || || ||||||||||| Sbjct 29520 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGGCGAACGAGCCGGAGAAGAAGATG 29579 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA---GGAGCGCGACTTTGTGTCA 126223 ||||| || || || || | ||||||||| || || |||||||| | ||| Sbjct 29580 CCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCGAACGTGGAGCGCGTGTCGGTG--- 29636 Query 126224 AACCACTTCATCGCCCACTGC-GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 126282 | |||||| | ||||| ||| ||||| |||| ||| ||||||| ||| | ||| || || Sbjct 29637 ATCCACTTGAGAGCCCA-TGCGGCCTTCTTCTGGATGCACGGGATGGTGTCGATGGCCTC 29695 Query 126283 AAAGAG 126288 || || Sbjct 29696 GAACAG 29701 >seq1 Length=2178591 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||| || ||| | ||||||||||| || || |||||||| ||||||||| Sbjct 1447960 CCCTCGTCCCGACTGATCAACTCATTCGAGAACGTCAAGCCCGGCATGAGCCCCCGCTTC 1448019 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 ||||||||||| || || || || || ||||| ||||| ||||| ||||| ||||| Sbjct 1448020 TTCAACCAGAAGATGGCTGCGAACGACCCGGAGAAAAAGATCCCCTCGACACAAGCGAAG 1448079 Query 126185 GCAAAGAGACG 126195 || | ||| || Sbjct 1448080 GCGACGAGTCG 1448090 >seq3 Length=1717572 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171923 AGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAG 171982 ||||| || ||||||||||| ||| | || | ||||| ||||| |||| || Sbjct 32405 AGACGAGTACCAAATTGACCGTTAGGTGCGAGCAAGTTGATGTTGTTGCTTCCCACAAAG 32346 Query 171983 TCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGAC 172042 | ||||| |||||||| ||| |||||| || ||||| |||||||||| | Sbjct 32345 CTCTGCGCCAAACCCACAATCGTCGCCGTGAGGGACTGCTCGCCGTGGTGGTAGGCCGTC 32286 Query 172043 TTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTGTGG 172102 || |||| ||||| | |||| ||||||||| || ||||| | ||||||| | | Sbjct 32285 TTCTCCGACACATAACCAGCCAGCTGTGCCACTTTGATCTCCTTGGTGAGGTTGCGCTTG 32226 Query 172103 AAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTCGGC 172149 || || || ||| |||||||| || ||| || || || ||||| Sbjct 32225 AAACAACCAAACAAGACCTTTCGTTGACCAGGTTTCAGTCCATCGGC 32179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353189319400