Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq14 201 1e-46 seq18 109 5e-19 seq5 91.5 1e-13 >seq14 Length=977059 Score = 201 bits (222), Expect = 1e-46 Identities = 763/1180 (65%), Gaps = 53/1180 (4%) Strand=Plus/Minus Query 153300 TGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTA 153359 ||||| || ||||| |||||||| ||| | | ||| || || ||| ||| || | Sbjct 768976 TGGGCGAGCTCGCACGACGCCTCGAGAGCGGCGTGGTAGATCGTCTCGAAGATCTGGATG 768917 Query 153360 TTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCC 153419 ||||| || || | ||| ||||||||||||| || |||||| ||||| Sbjct 768916 TTGAGCTCGCGGGCGGCGGGCGAGTCGAACGGCATGCGCAGAGCCATAAAGGCATCGGCG 768857 Query 153420 AGACCCTGGATACCGACGCCGATGGGTCGATGC------TTCTCGTTGCTGCGCCTCGCG 153473 |||||||||| ||||| ||||| || || || ||| ||||| | ||||| Sbjct 768856 AGACCCTGGACACCGAGGCCGACAGGGCGGTGACGCATGTTCGAGTTGCGG-GCCTC--- 768801 Query 153474 CTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTA 153533 || | | || |||| ||||| ||| | ||| |||||| || || || Sbjct 768800 CTTGACAGGG--TAGTAGTTGCGGGTGATGACCGTGTCGAGGTTCTTGGTGACGACCTTT 768743 Query 153534 GTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATT---TC---GTCGACGCGTACGCAT 153587 || ||| | | || |||| ||| || ||| | | || |||||| |||| Sbjct 768742 GTGATCTCGTGGAGCTTCTTGAAGTCGTAGACCCTGCGCTCCATGTCGACAA--ACGCGG 768685 Query 153588 CGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGC 153647 || ||| | || || || || |||||||| ||| |||| | | ||||| Sbjct 768684 GGAG----GGCGAGCGAGGCGAGGTTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTCG 768629 Query 153648 ACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCT-TTT 153706 | |||||||| |||||||||| | || ||| ||| | | ||||| ||| ||| Sbjct 768628 ATGATCTCGGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTT 768569 Query 153707 GCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGAC 153766 ||| | || ||||| ||| |||||||| | || || ||||||||| || | |||| Sbjct 768568 GCGTTGGCG-GCGTCCTTGTAGAGCATGAAGGGGCCACCGGTCTCGGTCTGGGCCTCGAG 768510 Query 153767 GAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGA---TAGCGGCCCTCGCT 153820 ||| ||||| || | |||||| | | || ||| | || | ||| Sbjct 768509 GATGGCAAACCAGAGC---TTCTGCGCCTTGATCGTCTTGCGACCCTTGCCGGCCTG--- 768456 Query 153821 CTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCA-GTCGGCGAGGCCGGGAC 153879 |||||| | |||||| || |||||||| |||||||| ||| ||||||||||||||| | Sbjct 768455 CTCGTAGCTCTCGTAGAGCTTCTCAAACTGGTCGCCGT-GCACGTCGGCGAGGCCGGGGC 768397 Query 153880 ACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGAT 153939 ||| || ||||| |||| ||| ||||||| | |||||| |||||| || | Sbjct 768396 ACTCGGCGGGGCACATGAGCGTCCAGTCGCCGTCGGCCTCGACGCGCTTCATGAAGAGGT 768337 Query 153940 CCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGC 153999 ||| | |||||| ||||| | ||||| || || | |||||| ||| ||| Sbjct 768336 CCGAGATCCAGAGGGCGTAGAACAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGGTTCT 768277 Query 154000 GTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGG 154059 | || | ||| | | |||||||||||||||| || || | ||||| || | || Sbjct 768276 TCCTGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCCAAGGCTCGAGGTAGATCGCAAAGG 768217 Query 154060 CACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCA 154116 |||| |||| || || ||||| ||||||| ||| | | || | | |||| | Sbjct 768216 CACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGGCGTCGTACGCGCGGA 768157 Query 154117 CCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGC 154176 ||| || | | ||| | | | |||||||| ||| | | ||| ||||| Sbjct 768156 GCATCGGGACGATACCGTTCGAGTAACCGTTGGTACCGGCGATGTAGGAGCCCTTGGCGC 768097 Query 154177 GCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-GTCG 154235 | | | || | || || || || || ||| || |||||| || |||||| ||| Sbjct 768096 GGATGTTGTGGATGTGAAGACCGATACCACCGGCGGTCTTTGAGATCTGAGCGCACGTC- 768038 Query 154236 CCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAA 154295 |||||| |||||| ||||| || ||||| | | | ||| | ||| ||||| Sbjct 768037 TTGAGCGTCTCGTAGATCCCGTCAATCGAGTCGTCCCTCATGGCGACGAGGAAGCACGAC 767978 Query 154296 CACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGT 154355 |||| || || || |||| || || ||||| ||||| ||||| || || Sbjct 767977 GACATCTGGGGGTTGGGCGTGCCGGCGTTGAAGAGCGTGGGCGAGGCGTGAGTGAA---- 767922 Query 154356 TTTTGGCT----CATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAAT 154411 | | ||| ||| | | |||||| |||||| | | ||||| | ||||| || Sbjct 767921 GTATCGCTCCGACATGAGGTTGTACGTCTCGATGACCTTGTCGATGTTGGATCCGTGGAT 767862 Query 154412 GCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCG 154451 |||| ||||| ||||||| ||||||||| || || ||| Sbjct 767861 ACCGACGGCGACACGCATGATCATGTGCTGGGGTCGCTCG 767822 >seq18 Length=823183 Score = 109 bits (120), Expect = 5e-19 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC---CGCC 52385 |||||| | | || ||||| ||||| | ||||||||| | |||||| | || Sbjct 29677 CCGTGCATCCAGAAGAAGGCCGCATGGGCTCTCAAGTGGATC---ACCGACACGCGCTCC 29621 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 ||| | |||||||| | | ||||| ||| ||||||||| | || || |||||| Sbjct 29620 ACGTTCGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCG 29561 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 || ||| | ||||| | | || | | ||| | ||||||||||| || ||| |||| Sbjct 29560 TTCGCCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 29501 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC 52550 ||| | || ||||| ||||| || || ||||| |||||||||||| Sbjct 29500 GAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCGTGC 29456 Score = 102 bits (112), Expect = 8e-17 Identities = 128/173 (74%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || | ||||||||| || || || | Sbjct 45940 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTCCTTCCGTCCTCGAGCTGCTTGCCCGCG 45999 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| ||||||||||||||||| || ||||| || ||||| ||| || || | | Sbjct 46000 AAGATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACA 46059 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 ||| || | |||||| | ||||| ||||||| || | ||| || || |||| Sbjct 46060 TTG-TCAATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTGCCGGTCA 46111 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | || | | | |||||||| || |||||||||||| Sbjct 46981 CCACCGCGGAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 47040 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || |||| | || || || || ||||||||||| Sbjct 47041 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGTTGCTGGTCCGGAGGG 47100 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | ||||| | |||||| ||| Sbjct 47101 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCAACC 47160 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || |||||||| || || ||||||||||| Sbjct 47161 TCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 47207 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| ||||| |||||||||||| | || || ||| || || || || |||| Sbjct 46786 GACTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCCAGCTGCTTGCCGGCG 46845 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || ||||| |||||||| || || || || || ||||| ||| || || | | Sbjct 46846 AAAATGAGACGTTGTTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACA 46905 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| |||||| ||||||| ||| | ||| || || || || || || Sbjct 46906 TTG-TCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTT 46964 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 46965 GACGAAGATCTGCAT 46979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 52649 CGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTT 52708 ||| || || ||| ||| | ||||||||| | || ||||||| | ||||||||||| Sbjct 29234 CGCCCTCCCCGTCTCGCTCATCGGCATGAACTCCAAGCTCATGTGCCAATACATCGAGTT 29175 Query 52709 TGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATC 52767 ||| || || |||||| | || ||| |||| | | ||| || ||||| ||| | Sbjct 29174 TGTCGCCGACCGTCTGCTCGTCGCCCTC-GGCAACGACAAGATCTGGAACGCCACCAACC 29116 Query 52768 CGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAG 52827 | || || || ||| | | || ||||| |||||||| | ||||| |||||| ||||| Sbjct 29115 CCTTCGACTTCATGGAGATGATCTCGCTCCAGGGCAAGGCGAACTTCTTCGAGTCGCGAG 29056 Query 52828 TC 52829 || Sbjct 29055 TC 29054 Score = 86.0 bits (94), Expect = 6e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||||| ||| ||||| || || |||| Sbjct 46222 GACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCTTCGAGCTGCTTGCCGGCG 46281 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || ||||| || ||||| ||| || || | Sbjct 46282 AAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACG 46341 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 | || | |||||| | |||||| ||||||| || | || || || |||| Sbjct 46342 TTGTCGATGGTGTCAGACGACTCGACCTCGAGGGTAATGGTCTTTCCCGTCA 46393 >seq5 Length=1498571 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | || | | | |||||||| || ||||||||||| Sbjct 692037 CCACCACGCAGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 692096 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || || | |||| || |||||||||||||| || Sbjct 692097 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGG 692156 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | |||| || | |||||||| |||||||| Sbjct 692157 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTG-TCGATGGTGTCGGAAGACTCCAC 692215 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAG 138593 ||||| || | ||| || || || || Sbjct 692216 CTCGAGGGTGATCGTCTTGCCCGTAAG 692242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262058819600