Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18 113 4e-20 >seq18 Length=823183 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | || | || | || | || ||||| || || || ||||| ||| Sbjct 46980 TCCACCGCGGAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 47039 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || ||||| || || ||| | |||| || ||||| || ||||| Sbjct 47040 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGTTGCTGGTCCGGAGG 47099 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||||||| ||| || ||||| |||| |||| ||||||| ||| | Sbjct 47100 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATCGTGTCCGACGACTCAA 47158 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| || | || |||||||||||||| || || ||||||||||| Sbjct 47159 CCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 47207 Score = 102 bits (112), Expect = 8e-17 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| |||||||| || ||||| |||||||||||| Sbjct 47340 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTG 47399 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||| |||| |||| |||||||| | ||||||||||| ||| | Sbjct 47400 TCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCGACTTCGAGGGTGAT 47458 Query 127078 CGTTTTGCCGGTCAG 127092 || || ||||| || Sbjct 47459 GGTCTTTCCGGTGAG 47473 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 ||||| ||| | ||||| || ||| |||||||||| |||||||||| ||| || || Sbjct 29614 GCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCC 29555 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 |||| || | | || | || | |||||||||||||| || ||||||||| Sbjct 29554 TCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTC 29495 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG 47290 |||||| | ||||| || || |||||| ||||||| || Sbjct 29494 ATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCGTG 29457 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| |||| || || | || || ||||| || || Sbjct 45936 CGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTCCTTCCGTCCTCGAGCTGCTTGCC 45995 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||||| ||||| || || || || || |||||||||||| ||| ||| ||| Sbjct 45996 CGCGAAGATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTT 46055 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 || | || | |||||| | | |||||| |||| ||| | ||| |||||||||| Sbjct 46056 GACATTGTCAATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTGCCGGTCA 46111 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||||||||| || ||||| ||| | || || || || ||||| || || Sbjct 46783 GTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCCAGCTGCTTGCCG 46842 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | || || || || || || ||||||||||||||| ||| ||| |||| Sbjct 46843 GCGAAAATGAGACGTTGTTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 46902 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | |||||| |||| || | ||| ||||| || || || Sbjct 46903 ACATTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTGCCCGTGAGGGTC 46962 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 46963 TTGACGAAGATCTGCAT 46979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | ||| | || | || | ||| ||||| || || || ||||| || Sbjct 46188 TCCACCACGCAGTCGGAGAACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 46247 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| || || ||||| || || ||| |||| | |||||||| || || || Sbjct 46248 AAGGGTACGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 46307 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||||||| ||| ||| ||||| |||| |||| |||||| | ||||| Sbjct 46308 GATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTG-TCGATGGTGTCAGACGACTCGA 46366 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCA 127091 | |||| ||| | || || || |||| Sbjct 46367 CCTCGAGGGTAATGGTCTTTCCCGTCA 46393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500473093200