Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq14 241 2e-58 seq18 132 6e-26 seq3 98.7 1e-15 seq1 98.7 1e-15 >seq14 Length=977059 Score = 241 bits (266), Expect = 2e-58 Identities = 894/1385 (65%), Gaps = 37/1385 (3%) Strand=Plus/Minus Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| ||||| |||||||| || || | ||| || | || ||||| |||||||| Sbjct 769195 GTGTAGGGCTCGAAGCACTCGTTCCACCCGAGGATCTGCGAGGTCGAGGCGGTGGGCATC 769136 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034 || || | ||| || |||||||| ||| | | | ||| || ||| | || Sbjct 769135 GGCGCGACGAGGAGCGAGTTGCGGACACCGTGCTGCTTGATGTTCTCGCGGAGAGGAGCC 769076 Query 116035 CAGTCGTAGTTGAGCTTTGTCT---CCCCCTCCCACATATCAAACTGGAGGATACCTTGG 116091 ||||| || || | ||| | | |||||| || |||||||| ||| | | Sbjct 769075 CAGTCCCAG---AGGTCGGTCGGGACGCGGCCCCACAGGTCGGGCTGGAGGAGACCCTTG 769019 Query 116092 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC---GCCAATTCGGAG 116148 || ||||| ||||| | ||||| || ||| || |||| || | ||| | Sbjct 769018 GAGATGGGCGAGCCCTCGTAGGTCTCGTACTTGCC---AAACTCCTGGGCGAGCTCGCAC 768962 Query 116149 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCC 116208 ||||||||| || ||||| || || ||||| || || | || | | ||| Sbjct 768961 GACGCCTCGAGAGCGGCGTGGTAGATCGTCTCGAAGATCTGGATGTTGAGCTCGCGGGCG 768902 Query 116209 TCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACC 116267 || || || |||| | || || | ||||| |||| |||||||| |||||||| Sbjct 768901 GCGGGCGAGTCGAACGGCATGCG-CAGAGCCATAAAGGCATCGGCGAGACCCTGGACACC 768843 Query 116268 GAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATT 116327 |||||| | ||||| || | ||| || || || || || || || || || | || Sbjct 768842 GAGGCCGACAGGGCGGTGACGCATGTTCGAGTTGCGGGCCTCCTTGACAGGGTAGTAGTT 768783 Query 116328 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 116387 | ||| ||| | | || || |||||||| ||||||||||| || || ||||| | Sbjct 768782 GCGGGTGATGACCGTGTCGAGGTTCTTGGTGACGACCTTTGTGATCTCGTGGAGCTTCTT 768723 Query 116388 GTAATCAAAA---CTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 116444 | | || | ||||| ||| | |||| || || ||||||| || || || Sbjct 768722 GAAGTCGTAGACCCTGCG---CTCCATGTCGACAAACGCGGGGAGGGCGAGCGAGGCGAG 768666 Query 116445 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 116504 || || || | | ||| || ||| |||||| || || || || || | || || Sbjct 768665 GTTGCAGACGGCGACCTCGTCGGGGGCAGAGTACTCGATGATCTCGGTGCAGAGGTTGGA 768606 Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAG 116564 ||| |||||||| | || || || || ||||||| ||| || ||||||||||| Sbjct 768605 CGACTTGATGGTGCCGAGGTGCTGCTGGTTGGACTTTGCGTTGGCGGCGTCCTTGTAGAG 768546 Query 116565 CATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGG 116623 ||| | || || ||||| || |||| || ||| || || ||| | | || ||| Sbjct 768545 CATGAAGGGGCCACCGGTCTCGGTCTGGGCCTCGAGGATGGCAAACCAGAGCTTCTGCGC 768486 Query 116624 CTGGCACAG-TGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAAC 116682 || | | | ||| || ||| ||| |||||| | |||||| ||||||| Sbjct 768485 CTTGATCGTCTTGCGACC-CTTGCCGG-CCTGCTCGTAGCTCTCGTAGAGCTTCTCAAAC 768428 Query 116683 TCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGA 116742 | || || | || | ||| || || || | || || | ||| | ||| | Sbjct 768427 TGGTCGCCGTGCACGTCGGCGAGGCCGGGGCACTCGGCGGGGCACATGAGCGTCCAGTCG 768368 Query 116743 CCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCC 116802 || | |||| || ||||||||||||||||| | ||||||||| || |||| || || Sbjct 768367 CCGTCGGCCTCGACGCGCTTCATGAAGAGGTCCGAGATCCAGAGGGCGTAGAACAGGTCA 768308 Query 116803 CGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 116862 || ||| |||| || | || || || | | || | ||||| | ||| || Sbjct 768307 CGGGCGCGGACTTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAAGTCGAAGATGTCG 768248 Query 116863 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGA------CCAGCCTGG 116916 |||||||| || || ||||| | ||| | | || | |||| ||| ||||| Sbjct 768247 GCGTGCCAAGGCTCGAGGTAGATCGCAAAGGCACC---GGGACGCTTGTTGCCACCCTGG 768191 Query 116917 TTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGG 116976 | || || | || || |||| | |||| ||||| || | |||||| | || | Sbjct 768190 TCGACGTAGCGGGCAGTGGCGTCGTACGCGCGGAGCATCGGGACGATACCGTTCGAGTAA 768131 Query 116977 CCATTTGTCCCC-CGAA-TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAA 117034 || || || || ||| || ||| | | |||| | || | ||||||||| | ||| | Sbjct 768130 CCGTTGGTACCGGCGATGTAGGAGCCCT--TGGCGCGGATGTTGTGGATGTGAAGACCGA 768073 Query 117035 TACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGA 117094 |||| || || ||||||||| || |||||| | |||| | |||||||||| || | Sbjct 768072 TACCACCGGCGGTCTTTGAGATCTGAGCGCACGTCTTGAGCGTCTCGTAGATCCCGTCAA 768013 Query 117095 TCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAG 117154 ||||||| || | | |||| ||||||||| |||||| || || | || || || | Sbjct 768012 TCGAGTCGTCCCTCATGGCGACGAGGAAGCACGACGACATCTGGGGGTTGGGCGTGCCGG 767953 Query 117155 CGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCT 117214 |||||||||| || || | ||||| |||| | | ||||| | ||| |||| Sbjct 767952 CGTTGAAGAGCGTGGGCGAGGCGTGAGTGAAGTATCGCTCCGACATGAGGTTGTACGTCT 767893 Query 117215 CCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATT 117274 | | ||| | |||| ||||| ||||||| | ||| ||||| | ||||| | Sbjct 767892 CGATGACCTTGTCGATGTTGGATCCGTGGATACCGACGGCGACACGCATGATCATGTGCT 767833 Query 117275 GGGGT 117279 ||||| Sbjct 767832 GGGGT 767828 >seq18 Length=823183 Score = 132 bits (146), Expect = 6e-26 Identities = 177/245 (72%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||||||||||||||| |||||||| || || |||||| || || Sbjct 29460 GCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCG 29519 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | |||||| |||| || ||||| ||||||||||| Sbjct 29520 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGGCGAACGAGCCGGAGAAGAAGATG 29579 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA---GGAGCGGGACTTTGTATCA 127696 ||||| || || || || | ||||||||||| || |||||| | | || Sbjct 29580 CCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCGAACGTGGAGCGCGTGTCGGT---G 29636 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 | |||||| | ||||| ||||| |||| ||| || |||| ||| | ||| || || Sbjct 29637 ATCCACTTGAGAGCCCATGCGGCCTTCTTCTGGATGCACGGGATGGTGTCGATGGCCTCG 29696 Query 127757 AAGAG 127761 || || Sbjct 29697 AACAG 29701 >seq3 Length=1717572 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 175943 AGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAG 176002 ||||| || ||||||||||| || | || | ||||| ||||| |||| | || Sbjct 32405 AGACGAGTACCAAATTGACCGTTAGGTGCGAGCAAGTTGATGTTGTTGCTTCCCACAAAG 32346 Query 176003 TCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGAC 176062 | |||||| |||||||| ||| |||||| || ||||| |||||||||| | Sbjct 32345 CTCTGCGCCAAACCCACAATCGTCGCCGTGAGGGACTGCTCGCCGTGGTGGTAGGCCGTC 32286 Query 176063 TTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGG 176122 || |||| |||||| | |||| ||| ||||| || ||||| | ||||||| | | Sbjct 32285 TTCTCCGACACATAACCAGCCAGCTGTGCCACTTTGATCTCCTTGGTGAGGTTGCGCTTG 32226 Query 176123 AAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTCGGC 176169 || || || ||| |||||||| || ||| || || || ||||| Sbjct 32225 AAACAACCAAACAAGACCTTTCGTTGACCAGGTTTCAGTCCATCGGC 32179 >seq1 Length=2178591 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| || ||| | ||||||||||| || || |||||||| ||||||||| Sbjct 1447960 CCCTCGTCCCGACTGATCAACTCATTCGAGAACGTCAAGCCCGGCATGAGCCCCCGCTTC 1448019 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 ||||||||||| || || || || || ||||| ||||||||||| ||||| ||||| Sbjct 1448020 TTCAACCAGAAGATGGCTGCGAACGACCCGGAGAAAAAGATCCCCTCGACACAAGCGAAG 1448079 Query 127658 GC 127659 || Sbjct 1448080 GC 1448081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506778213800