Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq18 141 1e-28 seq5 111 2e-19 seq3 89.7 6e-13 >seq18 Length=823183 Score = 141 bits (156), Expect = 1e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| |||||||| ||||||||||| || || || |||| || ||||||||||||||||| Sbjct 46788 CTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCTTCCAGCTGCTTGCCGGCGAA 46847 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||| | ||| | || |||||||||| ||||||| ||||| | Sbjct 46848 AATGAGACGTTGTTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 46907 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||||| ||| || || || | |||||| || |||||||| || || || || Sbjct 46908 GTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGAC 46967 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 46968 GAAGATCTGCATT 46980 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || |||||||||||||||||||| Sbjct 47016 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 47075 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||| |||||||| | || | | |||||||||| |||||| ||||| ||| Sbjct 47076 AATCAGGCGTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 47134 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || || | |||||||| ||||| ||||| || || | Sbjct 47135 TGTCGATCGTGTCCGACGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGA 47194 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 47195 CGAAAATCTGCAT 47207 Score = 113 bits (124), Expect = 5e-20 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| |||||||||||||||||||| Sbjct 46224 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCGTCTTCGAGCTGCTTGCCGGCGAA 46283 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| ||||||| ||||| ||| Sbjct 46284 GATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 46342 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | | ||||| ||| || || || | || ||||| || ||||||| Sbjct 46343 TGTCGATGGTGTCAGACGACTCGACCTCGAGGGTAATGGTCTTTCCCGTCA 46393 Score = 98.7 bits (108), Expect = 1e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || || ||||| |||| |||||||||||||||||||| |||| ||||||| Sbjct 47317 TGTAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCT 47376 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG 46534 |||| | || | || |||||||||| |||||| ||||| ||| | | | ||||| Sbjct 47377 GGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCC 47435 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 || || || || | |||||||| || || || || Sbjct 47436 GAAGACTCGACTTCGAGGGTGATGGTCTTTCCGGTGAG 47473 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || || | |||| |||||||||||||| ||||| Sbjct 45942 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTCCTTCCGTCCTCGAGCTGCTTGCCCGCGAA 46001 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||| ||||| | || | | |||||||||| ||||||| ||||| | Sbjct 46002 GATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACATT 46061 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | ||||| || || || || | ||||| || ||||| |||| Sbjct 46062 GTCAATGGTGTCAGAAGACTCGACCTCGAGGGTGATCGTCTTGCCGGTCA 46111 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || | ||||| |||| ||||||||||||||||| || Sbjct 46509 CTCCTTCTGGATGTTGTAGTCCGACAAGGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAA 46568 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGAT 46506 || | |||||||||||| | ||| | || |||| || ||||| Sbjct 46569 GATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCCTGAGAATGAT 46613 >seq5 Length=1498571 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| |||||||||||||| ||||| Sbjct 692072 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 692131 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||| ||||| | || | | |||||||||| |||||| ||||| | Sbjct 692132 GATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 692191 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | |||||| || ||||| || | ||||| || |||||||| || Sbjct 692192 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTGCCCGTAAG 692242 >seq3 Length=1717572 Score = 89.7 bits (98), Expect = 6e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || || || || |||| |||||||||||||||||||| || | ||||| | Sbjct 192620 TGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTT 192679 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG 46534 |||| | || | | |||||||||| ||||||| ||||| ||| | | | ||||| Sbjct 192680 GGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCC 192738 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 || ||||| || | |||||||| || || || || Sbjct 192739 GAGGACTCCACCTCGAGGGTGATGGTCTTCCCGGTGAG 192776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238011398600