Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq18 167 2e-36 seq5 123 2e-23 seq3 98.7 1e-15 >seq18 Length=823183 Score = 167 bits (184), Expect = 2e-36 Identities = 190/255 (75%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||| | |||||| ||||||||| || | |||||||| | || ||||| |||||| Sbjct 29446 TGAAGAGCAAGCACGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGG 29505 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | |||||||||||||||||| || |||||||| || || | |||||| || Sbjct 29506 AGAAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGGCGAACGAGC 29565 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||||| |||||||||||| || || || | || |||||| ||||||||| Sbjct 29566 CGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCGAACGTGGAGC 29625 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 || || |||||| || |||||| ||||||| | | || |||||| || || | Sbjct 29626 GCGTGTCGGTGATCCACTTGAGAGCCCATGCGGCCTTCTTCTGGATGCACGGGATGGTGT 29685 Query 133124 CGATGGCGTTCAACA 133138 ||||||| | |||| Sbjct 29686 CGATGGCCTCGAACA 29700 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||||||||| || ||||| |||| |||||| | | Sbjct 46980 AATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTC 46921 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||||| | | | | || | || |||| ||||| ||||| || |||||| |||| Sbjct 46920 CGACACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCAGACC 46862 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || ||||||| ||| ||||| |||||||| |||| || |||||| |||||||| Sbjct 46861 AACAACGTCTCATTTTCGCCGGCAAGCAGCTGGAAGACGGCCGAACCCTCTCCGACTACA 46802 Query 38422 ACATCCAAAAGGA 38434 |||||||||| || Sbjct 46801 ACATCCAAAAAGA 46789 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || ||||| || |||||| |||| |||||| | | |||| | | | | | || | Sbjct 46109 ACCGGCAAGACGATCACCCTCGAGGTCGAGTCTTCTGACACCATTGACAATGTCAAGGCG 46050 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| | ||||||||||| || || | ||||||||| Sbjct 46049 AAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGTCTGATCTTCGCGGGCAAG 45990 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| | ||||| | ||||||||||||||| ||||| |||||||||| Sbjct 45989 CAGCTCGAGGACGGAAGGACCCTGAGCGACTACAACATCCAGAAGGAGTCGACGCTGCAC 45930 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 | || || ||| || | || || Sbjct 45929 CTCGTCCTCCGTCTGCGTGGTGG 45907 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| |||| || ||| | | Sbjct 47207 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCGTCG 47148 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 47147 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCA 47089 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || |||| ||| ||||| ||||| || || | ||||||||| ||||||||| Sbjct 47088 GCAACGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAA 47029 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| |||| || || | || || ||| Sbjct 47028 CATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGT 46992 Score = 111 bits (122), Expect = 2e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 ||||| || ||||| ||| |||| |||||| | | |||| | | | |||| | || | Sbjct 46391 ACGGGAAAGACCATTACCCTCGAGGTCGAGTCGTCTGACACCATCGACAACG-TCAAGGC 46333 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| || ||| | ||||| ||||| ||||| | ||| ||||| Sbjct 46332 GAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAA 46273 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || |||| || ||||| |||||||||||||| ||||| ||||||| || Sbjct 46272 GCAGCTCGAAGACGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTTCA 46213 >seq5 Length=1498571 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324 || |||||||| || |||||| |||| || ||| | |||||| | | | | | || Sbjct 692242 CTTACGGGCAAGACGATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAG 692183 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 | || |||| ||||| ||||| || ||| | ||||||||||| || || | ||||||| Sbjct 692182 GCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGCCTGATCTTCGCGGGC 692123 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || |||| || |||||| |||||||||||||| ||||| |||| || Sbjct 692122 AAGCAGCTCGAGGACGGCCGAACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTC 692063 Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | ||||| ||| || | || || Sbjct 692062 CACCTCGTGCTCCGTCTGCGTGGTGG 692037 >seq3 Length=1717572 Score = 98.7 bits (108), Expect = 1e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| || || ||||||||| |||| || ||| || | |||| | | | |||| | || Sbjct 192776 CTCACCGGGAAGACCATCACCCTCGAGGTGGAGTCCTCGGACACCATCGACAACG-TCAA 192718 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| ||||| || ||| | ||||||||||| ||||||| ||| || Sbjct 192717 GGCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAGCGTCTCATTTTCGCCGG 192658 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||| ||||| || |||| || ||||| ||||||| Sbjct 192657 CAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACA 192620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172456131200