Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 396 3e-105 seq3 138 1e-27 seq29 82.4 1e-10 >seq2 Length=1957745 Score = 396 bits (438), Expect = 3e-105 Identities = 784/1155 (68%), Gaps = 8/1155 (1%) Strand=Plus/Minus Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 || ||||| ||||| || || |||| || | || ||||| | ||||| | ||| Sbjct 1284552 GGAGTCATGATACCGCCAGCGGTCTCGATACCCATGGAGAGAGGGGCGACGTCGAGGAGG 1284493 Query 6983 AACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 | |||||| || | ||| | || || || | ||||||||| ||||| | || Sbjct 1284492 AGCAGGTCCTGGGTGGCCTCGGACGTGTCGCCGGTGAGGATGGCGGCCTGGACGGCGGCA 1284433 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACC-GTTAAAATA 7101 ||||| ||||| ||||| |||||||| |||| | || | || ||| | || || Sbjct 1284432 CCGTACGCGACGGCCTCGTCGGGGTTGATCGACCTGTTGGGCTCGCGACCAGAGAACATG 1284373 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||||| | | | || || || ||||| || || || |||||||| | || || || Sbjct 1284372 -TCCGAGACGAGCTTCTGGATCTTGGGGATACGGGTGGAACCACCGACGAGGACAATCTC 1284314 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 | || ||| || |||||||| ||||| || || || ||||| || ||||| Sbjct 1284313 GTGGACCGACGACTTGTCGATCTTGGAGTCGCGGAGGACCTTCTCGACGGGCTCCATGGT 1284254 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 ||||| | |||| || || ||||| || || |||||||| || || || ||||| Sbjct 1284253 GGAGCGGAAGAGGTCCTGGCAGAGCTCCTCGAATCGGGCACGGGTGATCGAGGTGTAGAA 1284194 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGT 7341 || | ||||||| | | ||| || || || || | || || || | ||||| | || Sbjct 1284193 GTCGATGCCGTCGAAGAGCGAGTCGATCTCGATCGAGGTCTGGGCGGCGGAAGAGAGGGT 1284134 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 |||||| || |||||||| || ||||| | |||||| || || || | ||| || | Sbjct 1284133 TCGCTTGGCACGCTCACAGGCGGTTCGGAGACGACGGAGAGCGCGGGCGTTGGAAGAGAG 1284074 Query 7402 ATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAA 7461 || ||||| | || || || ||||| | ||||| | ||| | || || Sbjct 1284073 GTCCTTCTTGTTCTTGCGCTTGAACTCCTGGACAAAGTGGTTGACGAGACGGTTGTCAAA 1284014 Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521 || |||||||| | || || || || ||||| || ||||| || ||||| || | || Sbjct 1284013 GTCCTCACCACCGAGATGGGTGTCACCGGCGGTGGCCTTGACCTCGAAGATGCCCTCCTC 1283954 Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGT 7581 |||| | | | ||| ||||| |||||||||||||| ||||| || ||||| |||||| | Sbjct 1283953 AATGGTGAGGAGCGAGACATCGAACGTACCACCACCGAGGTCGAAGATGAGAACGTTCTT 1283894 Query 7582 ATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 ||| || | ||||| ||||||||||| ||||| || || || || || || || || Sbjct 1283893 CTCGCCGGCGCCCTTCTTGTCGAGACCGTAGGCGATGGCGGCGGCGGTGGGCTCGTTGAT 1283834 Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 ||||| || || || || | || | || || || || || || || ||||| Sbjct 1283833 GATACGGAGGACGTCGAGACCCGAGATGACACCGGCGTCCTTGGTGGCCTGACGCTGCGA 1283774 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA 7761 ||||| |||||||| ||||| || ||||| || | ||||| | |||||| || | Sbjct 1283773 GTCGTTGAAGTAGGCAGGGACGGTGACGACGGCCTTGGTGACGGTGCCACCGAGGTAGGC 1283714 Query 7762 TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTG 7821 || ||| | || ||||| ||| || ||||| || || ||||| || | | ||||| Sbjct 1283713 CTCGGCGGTCTCCTTCATCTTGAGGAGGACCATGGACGAGATCTCCTCGGGAGTGAACTG 1283654 Query 7822 TTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAAC 7881 || || || || | || || || |||| ||| || |||| | | ||| || Sbjct 1283653 CTTGGTCTCCCCTCGGTACTCGACCTCGATCACGGGCTT-GCCGC--CCTTGTCGATGAC 1283597 Query 7882 CTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGAT 7941 ||| | | ||| | ||||| ||| ||||||| ||| | |||||| | || || Sbjct 1283596 CTTGAAGGGCCAGTGCTTCATGTCGGACTGGACCTCGGCGTCGGCAAACTTGCGGCCAAT 1283537 Query 7942 AAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGC 8001 |||||||| || || || || ||||| | ||||||||||| |||||||| || || Sbjct 1283536 GAGACGCTTGGCGTCGAACACCGTGTTGTACGGGTTCATGGCGACCTGGTTCTTGGCGGC 1283477 Query 8002 GTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATT 8061 || ||||| ||||| || | || | || |||||||| || ||||||||||| || Sbjct 1283476 ATCGCCGATGAGACGCTC---AGAGTCGTTGAAGGCGACGTAGGAAGGGGTCGTTCGGTT 1283420 Query 8062 CCCTTGGTCGTTCGC 8076 || |||||||| || Sbjct 1283419 ACCCTGGTCGTTGGC 1283405 >seq3 Length=1717572 Score = 138 bits (152), Expect = 1e-27 Identities = 327/485 (67%), Gaps = 18/485 (4%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| ||| | |||| || ||| | | | ||| || Sbjct 59083 TCCTCGAAACGGGCACGGGTGATGTTGGCGGAGAAGTCGGTGCCCGAGAAGAGCGAGTCG 59142 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 | || | ||| || || | ||| || | || ||||| || ||||| ||||| | Sbjct 59143 ACCTCGACGGTGGTCTGGGTGACCGAGGAGAGGGTGCGCTTGGCACGCTCGCACGCGGAA 59202 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | ||| || |||||||| | || |||| || || ||| || || || ||| Sbjct 59203 CGGAGACGGCGCAGGGCACGGGCGTCCTCGGAGATGTCGAGCTTGGTCTTGCGCTTGAAC 59262 Query 7427 TCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 || | |||||| |||| ||| || | | ||||| || |||||||| | ||| || Sbjct 59263 TCGGCCTTGAAGTGCTCGAGCAGG-GTGTTG--TCGAAGTCCTCACCACCGAGGTGGGTG 59319 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCT--CCTTCAATGTTTAACAACGAAACAT 7541 || || ||||| || ||||| | || | ||| || ||| | || || |||| Sbjct 59320 TCACCGGCGGTGGCCTTGACGGCGAACA--CCTTGCCGGTGATGGAGAGCAGGGAGACAT 59377 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGTCGTCTTTGTTCTTA 7600 | || ||||||||||| |||||||| ||||| ||||| || || || ||| |||| Sbjct 59378 CGAAGGTACCACCACCGAGGTCAAAGATGAGGACGTTGCG----CTCCTCCTTGGTCTTC 59433 Query 7601 TCG---AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 ||| |||||||| ||||| || || || || || || || || ||||| || | Sbjct 59434 TCGTCAAGACCGTAGGCGATGGCGGCGGCGGTGGGCTCGTTGATGATACGGAGGACCTCG 59493 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 || || ||||| || | || || || || || | || ||||| ||||| |||||||| Sbjct 59494 AGACCGGCAATGGTACCGGCGTCCTTGGTGGCGAGACGCTGCGAGTCGTTGAAGTAGGCG 59553 Query 7718 GGGAC 7722 ||||| Sbjct 59554 GGGAC 59558 >seq29 Length=104528 Score = 82.4 bits (90), Expect = 1e-10 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 22601 GCAATGGTATAATGTTCAACCACGAATCACCGAGACGGGGTGAAAACTTCGTGACACGAA 22660 ||| |||| || ||||||||||||| || || ||||| || | ||||| || || | Sbjct 16602 GCAGTGGTGTACTGTTCAACCACGAGTCCCCCAGACGTGGCCGGACGTTCGTTACTCGCA 16543 Query 22661 AAATAACACTCGGTGTCGCTAATATCAG-TGCAGGTAAACAAAAATGTTTATACCTTGGT 22719 | || || | | ||||||| | ||||| ||| ||| ||| ||| | | | | || Sbjct 16542 AGATCACCCGTGCTGTCGCTGAGATCAGCTGC-GGTGGCCAAGGCTGTATGTTCATGGGC 16484 Query 22720 AACCTAGATGCGAAACGAGATTGGGGTCATGCACGCGATTACGTGAAATGTATGTGG 22776 ||| |||| |||||||| ||||||||||| || || || || || | | |||||| Sbjct 16483 AACATAGACGCGAAACGTGATTGGGGTCACGCTCGTGACTATGTCGAGGGCATGTGG 16427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132363346200