Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20sp._20JCM_2024511_20[genbank_20GCA_5F001600855.1_2020 16-03-01] 55 sequences; 28,180,937 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq14 170 2e-37 seq18 147 3e-30 seq3 84.2 3e-11 >seq14 Length=977059 Score = 170 bits (188), Expect = 2e-37 Identities = 675/1048 (64%), Gaps = 27/1048 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| |||||||||| || | || || || Sbjct 767829 CCCCAGCACATGATCATGCGTGTCGCCGTCGGTATCCACGGATCCAACATCGACAAGGTC 767888 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || ||||| | | || |||| ||||| | || || ||||| Sbjct 767889 ATCGAGACGTACAACCTCATGTCGGAGCGATAC-TTCACTCACGCCTCGCCCACGCTCTT 767947 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || || || | ||||| ||||| || ||||| | || | | ||| || Sbjct 767948 CAACGCCGGCACGCCCAACCCCCAGATGTCGTCGTGCTTCCTCGTCGCCATGAGGGACGA 768007 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || || | || || |||| || |||| || || || ||||||||| || || Sbjct 768008 CTCGATTGACGGGATCTACGAGACGCTCAAGACGTGCGCTCAGATCTCAAAGACCGCCGG 768067 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACA 111908 ||||||||| | |||||||| | || | ||||| | ||| || | | ||||| Sbjct 768068 TGGTATCGGTCTTCACATCCACAACATCCGCGCCAAG--GGCTCCTACATCGCCGGTACC 768125 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || ||| | || | ||||| | || ||||| |||| | ||||||| || ||||| Sbjct 768126 AACGGTTACTCGAACGGTATCGTCCCGATGCTCCGCGCGTACGACGCCACTGCCCGCTAC 768185 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || |||| | ||| ||||| | || | | || |||| || ||||| ||| Sbjct 768186 GTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTTGCGATCTACCTCGAGCCTTGG 768242 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||||| || ||| | || ||||| || | | ||||| || | ||||| | || Sbjct 768243 CACGCCGACATCTTCGACTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAAGTCCGC 768302 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 ||| || || |||| ||| |||||||| | || |||||||||||| | || |||| Sbjct 768303 GCCCGTGACCTGTTCTACGCCCTCTGGATCTCGGACCTCTTCATGAAGCGCGTCGAGGCC 768362 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG--- 112199 ||| | ||| | ||| | || || | | || ||||| ||| |||| |||| Sbjct 768363 GACGGCGACTGGACGCTCATGTGCCCCGCCGAGTGCCCCGGCCTCGCCGA---CGTGCAC 768419 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GA 112257 || || ||||||| |||||| | ||||| | || | | | | | || || Sbjct 768420 GGCGACCAGTTTGAGAAGCTCTACGAGAGCTACGA-GCAGGCCGGCAAGGGTC-GCAAGA 768477 Query 112258 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 || | | || || || | | ||| || || ||| || | || |||||||| ||| Sbjct 768478 CGAT-CAAGGCGCAGAAGCTCTGGTTTGCCATCCTCGAGGCCCAGACCGAGACCGGTGGC 768536 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 || | ||||| ||||| |||||| ||| |||| || || || | | || Sbjct 768537 CCCTTCATGCTCTACAAGGACGCCGCCAACGCAAAGTCCAACCAGCAGCACCTCGGCACC 768596 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 |||||| ||||||||||| || || ||| | || | | | | || ||| || Sbjct 768597 ATCAAGTCGTCCAACCTCTGCACCGAGATCATCGAGTACTCTGCCCCCGACGAGGTCGCC 768656 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 112496 || || |||||||| || |||| |||||| || ||| || ||| | | | Sbjct 768657 GTCTGCAACCTCGCCTCGCTCGCCCTCCCCGCGTTTGTCGACATGGAGCGCAGGGTCTAC 768716 Query 112497 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATT 112556 || | | || |||||||| | || || ||||| || ||||| ||| || || Sbjct 768717 GACTTCAAGAAGCTCCACGAGATCACAAAGGTCGTCACCAAGAACCTCGACACGGTCATC 768776 Query 112557 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 | || | ||||| || || || || || || || ||| | ||||| || | Sbjct 768777 ACCCGCAACTACTACCCTGTCAAGGAGGCCCGCAACTCGAACATGCGTCACCGCCCTGTC 768836 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATG 112644 || ||||||||||| |||||||| |||| Sbjct 768837 GGCCTCGGTGTCCAGGGTCTCGCCGATG 768864 >seq18 Length=823183 Score = 147 bits (162), Expect = 3e-30 Identities = 181/246 (74%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 || || || |||||| | || | || || || || ||||| || | |||||| | ||| Sbjct 29701 CTGTTCGAGGCCATCGACACCATCCCGTGCATCCAGAAGAAGGCCGCATGGGCTCTCAAG 29642 Query 102150 TGGTTTGATACAAAGTCGCGTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 102206 ||| | || | |||| ||| || || ||||| ||| |||| ||||| || Sbjct 29641 TGGATC---ACCGACACGCGCTCCACGTTCGCCGAGCGTCTCATCGCCTTTGCCGCCGTC 29585 Query 102207 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTC 102266 ||||| ||||||||||| || || ||| | | || | |||||||||||||| || ||| Sbjct 29584 GAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCTGGCTCAAGAAGCGCGGCCTC 29525 Query 102267 ATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAG 102326 ||||| || ||| ||||||||||||||| ||||| ||||||||||| |||||| || Sbjct 29524 ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGAC 29465 Query 102327 TTTGCG 102332 |||||| Sbjct 29464 TTTGCG 29459 >seq3 Length=1717572 Score = 84.2 bits (92), Expect = 3e-11 Identities = 198/299 (66%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 176036 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 176095 ||||| |||||||| ||||| || | || | ||||| ||||| |||| || Sbjct 32405 AGACGAGTACCAAATTGACCGTTAGGTGCGAGCAAGTTGATGTTGTTGCTTCCCACAAAG 32346 Query 176096 TCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTC 176155 | |||||| |||||||| ||| ||| || || ||||||||||| || || Sbjct 32345 CTCTGCGCCAAACCCACAATCGTCGCCGTGAGGGACTGCTCGCCGTGGTGGTAGGCCGTC 32286 Query 176156 TTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCCTTGAGATTCTTGTGG 176215 ||||| | ||| | | |||| ||| |||||||| ||||| | |||| || | | Sbjct 32285 TTCTCCGACACATAACCAGCCAGCTGTGCCACTTTGATCTCCTTGGTGAGGTTGCGCTTG 32226 Query 176216 AAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCCGCCATGTGTGCGATA 176275 ||||| | ||| ||||| ||||| ||| || || ||||| || | | | || Sbjct 32225 AAACAACCAAACAAGACCTTTCGTTGACCAGGTTTCAGTCCATCGGCAACGGAGGGAATG 32166 Query 176276 GAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTGTGTACAAAGTTTGAGAT 176334 || || | ||| |||| |||| || ||| ||||||| ||||||| ||||| Sbjct 32165 GATCGGATGTTGTCGGCCATGGAGAAGAGGATGAGCTCCTTGTTCACAAAGTCGGAGAT 32107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741973239600